1 ID J03321; SV 1; circular; genomic DNA; STD; PRO; 7502 BP.
5 DT 27-JUL-1990 (Rel. 24, Created)
6 DT 10-APR-2020 (Rel. 144, Last updated, Version 9)
8 DE Chlamydia trachomatis plasmid pCHL1, complete sequence.
12 OS Chlamydia trachomatis
13 OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
14 OC Chlamydia/Chlamydophila group; Chlamydia.
19 RX DOI; 10.1016/0147-619X(90)90034-A.
21 RA Comanducci M., Ricci S., Cevenini R., Ratti G.;
22 RT "Diversity of the Chlamydia trachomatis common plasmid in biovars with
23 RT different pathogenicity";
24 RL Plasmid 23(2):149-154(1990).
28 RA Comanducci M., Ricci S., Cevenini R., Ratti G.;
30 RL Submitted (23-JUN-2010) to the INSDC.
31 RL Sclavo Research Centre, Siena, Italy
33 DR MD5; d4c4942a634e3df4995fd5ac75c26a61.
34 DR BioSample; SAMN14225621.
35 DR EuropePMC; PMC4450983; 26031715.
36 DR EuropePMC; PMC87941; 11283058.
38 CC Draft entry and computer-readable sequence kindly submitted by
39 CC G.Ratti, 28-MAR-1990.
41 FH Key Location/Qualifiers
44 FT /organism="Chlamydia trachomatis"
48 FT /mol_type="genomic DNA"
49 FT /isolation_source="trachoma"
50 FT /db_xref="taxon:813"
51 XX next line artificially split for test purposes!
52 FT CDS join(7022..7502,
56 FT /product="hypothetical protein"
58 FT /db_xref="GOA:P0CE19"
59 FT /db_xref="InterPro:IPR002104"
60 FT /db_xref="InterPro:IPR011010"
61 FT /db_xref="InterPro:IPR013762"
62 FT /db_xref="UniProtKB/Swiss-Prot:P0CE19"
63 FT /protein_id="AAA91567.1"
64 FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE
65 FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG
66 FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR
67 FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV
68 FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS
69 FT SRQSVCSYCSGEEVIPLVQTPTIL"
70 FT CDS complement(488..1480)
73 FT /product="hypothetical protein"
75 FT /db_xref="GOA:P0CE20"
76 FT /db_xref="InterPro:IPR002104"
77 FT /db_xref="InterPro:IPR011010"
78 FT /db_xref="InterPro:IPR013762"
79 FT /db_xref="UniProtKB/Swiss-Prot:P0CE20"
80 FT /protein_id="AAA91568.1"
81 FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI
82 FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW
83 FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA
84 FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI
85 FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL
86 FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
90 FT /product="hypothetical protein"
92 FT /db_xref="GOA:P0CE16"
93 FT /db_xref="InterPro:IPR003593"
94 FT /db_xref="InterPro:IPR007693"
95 FT /db_xref="InterPro:IPR007694"
96 FT /db_xref="InterPro:IPR027417"
97 FT /db_xref="InterPro:IPR036185"
98 FT /db_xref="UniProtKB/Swiss-Prot:P0CE16"
99 FT /protein_id="AAA91569.1"
100 FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH
101 FT HKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT
102 FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA
103 FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI
104 FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG
105 FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI
106 FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI
107 FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW"
111 FT /product="hypothetical protein"
113 FT /db_xref="InterPro:IPR040719"
114 FT /db_xref="UniProtKB/Swiss-Prot:P0CE17"
115 FT /protein_id="AAA91570.1"
116 FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG
117 FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY
118 FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI
119 FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ
120 FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY
121 FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK
126 FT /product="hypothetical protein"
128 FT /db_xref="InterPro:IPR008444"
129 FT /db_xref="InterPro:IPR033758"
130 FT /db_xref="InterPro:IPR038264"
131 FT /db_xref="PDB:6GJT"
132 FT /db_xref="UniProtKB/Swiss-Prot:P0CE18"
133 FT /protein_id="AAA91571.1"
134 FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA
135 FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI
136 FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF
137 FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS
138 FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
142 FT /product="hypothetical protein"
144 FT /db_xref="UniProtKB/Swiss-Prot:P0CE23"
145 FT /protein_id="AAA91572.1"
146 FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL
147 FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE"
151 FT /product="hypothetical protein"
152 FT /note="pGP5-D (gtg start codon)"
153 FT /db_xref="GOA:P10559"
154 FT /db_xref="InterPro:IPR025669"
155 FT /db_xref="InterPro:IPR027417"
156 FT /db_xref="UniProtKB/Swiss-Prot:P10559"
157 FT /protein_id="AAA91573.1"
158 FT /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVYT
159 FT SNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICIID
160 FT TPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIALSFW
161 FT DDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKL
162 FT THEIANILHIEYERDYSQRTT"
166 FT /product="hypothetical protein"
167 FT /note="pGP6-D (gtg start codon)"
168 FT /db_xref="InterPro:IPR005350"
169 FT /db_xref="UniProtKB/Swiss-Prot:P10560"
170 FT /protein_id="AAA91574.1"
171 FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL
172 FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS
173 FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK
174 FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM
175 FT CSGVSLSSYNENLLQQLFELFKQKS"
176 FT repeat_region 6857..6945
177 FT /note="four tandem 22bp repeats"
179 SQ Sequence 7502 BP; 2460 A; 1285 C; 1433 G; 2324 T; 0 other;
180 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca 60
181 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat 120
182 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat 180
183 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg 240
184 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt 300
185 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt 360
186 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa 420
187 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac 480
188 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt 540
189 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc 600
190 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa 660
191 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca 720
192 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta 780
193 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct 840
194 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta 900
195 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg 960
196 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg 1020
197 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg 1080
198 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg 1140
199 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa 1200
200 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg 1260
201 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt 1320
202 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt 1380
203 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta 1440
204 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac 1500
205 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg 1560
206 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc 1620
207 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg 1680
208 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa 1740
209 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg 1800
210 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca 1860
211 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc 1920
212 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca 1980
213 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata 2040
214 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag 2100
215 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa 2160
216 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc 2220
217 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta 2280
218 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct 2340
219 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct 2400
220 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct 2460
221 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac 2520
222 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc 2580
223 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat 2640
224 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc 2700
225 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga 2760
226 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg 2820
227 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta 2880
228 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata 2940
229 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac 3000
230 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag 3060
231 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg 3120
232 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc 3180
233 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg 3240
234 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa 3300
235 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa 3360
236 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta 3420
237 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac 3480
238 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct 3540
239 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa 3600
240 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag 3660
241 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat 3720
242 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa 3780
243 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg 3840
244 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag 3900
245 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa 3960
246 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt 4020
247 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat 4080
248 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc 4140
249 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct 4200
250 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt 4260
251 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt 4320
252 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa 4380
253 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt 4440
254 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata 4500
255 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt 4560
256 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag 4620
257 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc 4680
258 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa 4740
259 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat 4800
260 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt 4860
261 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg 4920
262 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat 4980
263 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct 5040
264 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa 5100
265 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta 5160
266 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct 5220
267 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt 5280
268 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt 5340
269 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg 5400
270 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat 5460
271 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt 5520
272 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta 5580
273 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc 5640
274 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact 5700
275 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga 5760
276 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg 5820
277 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca 5880
278 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat 5940
279 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat 6000
280 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa 6060
281 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga 6120
282 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg 6180
283 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca 6240
284 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc 6300
285 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa 6360
286 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc 6420
287 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat 6480
288 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg 6540
289 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc 6600
290 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag 6660
291 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag 6720
292 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa 6780
293 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt 6840
294 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga 6900
295 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac 6960
296 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa 7020
297 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga 7080
298 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt 7140
299 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga 7200
300 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc 7260
301 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag 7320
302 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt 7380
303 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt 7440
304 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca 7500