1 ID J03321; SV 1; circular; genomic DNA; STD; PRO; 7502 BP.
5 DT 27-JUL-1990 (Rel. 24, Created)
6 DT 10-APR-2020 (Rel. 144, Last updated, Version 9)
8 DE Chlamydia trachomatis plasmid pCHL1, complete sequence.
12 OS Chlamydia trachomatis
13 OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
14 OC Chlamydia/Chlamydophila group; Chlamydia.
19 RX DOI; 10.1016/0147-619X(90)90034-A.
21 RA Comanducci M., Ricci S., Cevenini R., Ratti G.;
22 RT "Diversity of the Chlamydia trachomatis common plasmid in biovars with
23 RT different pathogenicity";
24 RL Plasmid 23(2):149-154(1990).
28 RA Comanducci M., Ricci S., Cevenini R., Ratti G.;
30 RL Submitted (23-JUN-2010) to the INSDC.
31 RL Sclavo Research Centre, Siena, Italy
33 DR MD5; d4c4942a634e3df4995fd5ac75c26a61.
34 DR BioSample; SAMN14225621.
35 DR EuropePMC; PMC4450983; 26031715.
36 DR EuropePMC; PMC87941; 11283058.
38 CC Draft entry and computer-readable sequence kindly submitted by
39 CC G.Ratti, 28-MAR-1990.
41 FH Key Location/Qualifiers
44 FT /organism="Chlamydia trachomatis"
48 FT /mol_type="genomic DNA"
49 FT /isolation_source="trachoma"
50 FT /db_xref="taxon:813"
51 FT CDS join(7022..7502,1..437)
54 FT /product="hypothetical protein"
56 FT /db_xref="GOA:P0CE19"
57 FT /db_xref="InterPro:IPR002104"
58 FT /db_xref="InterPro:IPR011010"
59 FT /db_xref="InterPro:IPR013762"
60 FT /db_xref="UniProtKB/Swiss-Prot:P0CE19"
61 FT /protein_id="AAA91567.1"
62 FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE
63 FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG
64 FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR
65 FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV
66 FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS
67 FT SRQSVCSYCSGEEVIPLVQTPTIL"
68 FT CDS complement(488..1480)
71 FT /product="hypothetical protein"
73 FT /db_xref="GOA:P0CE20"
74 FT /db_xref="InterPro:IPR002104"
75 FT /db_xref="InterPro:IPR011010"
76 FT /db_xref="InterPro:IPR013762"
77 FT /db_xref="UniProtKB/Swiss-Prot:P0CE20"
78 FT /protein_id="AAA91568.1"
79 FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI
80 FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW
81 FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA
82 FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI
83 FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL
84 FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
88 FT /product="hypothetical protein"
90 FT /db_xref="GOA:P0CE16"
91 FT /db_xref="InterPro:IPR003593"
92 FT /db_xref="InterPro:IPR007693"
93 FT /db_xref="InterPro:IPR007694"
94 FT /db_xref="InterPro:IPR027417"
95 FT /db_xref="InterPro:IPR036185"
96 FT /db_xref="UniProtKB/Swiss-Prot:P0CE16"
97 FT /protein_id="AAA91569.1"
98 FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH
99 FT HKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT
100 FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA
101 FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI
102 FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG
103 FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI
104 FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI
105 FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW"
109 FT /product="hypothetical protein"
111 FT /db_xref="InterPro:IPR040719"
112 FT /db_xref="UniProtKB/Swiss-Prot:P0CE17"
113 FT /protein_id="AAA91570.1"
114 FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG
115 FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY
116 FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI
117 FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ
118 FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY
119 FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK
124 FT /product="hypothetical protein"
126 FT /db_xref="InterPro:IPR008444"
127 FT /db_xref="InterPro:IPR033758"
128 FT /db_xref="InterPro:IPR038264"
129 FT /db_xref="PDB:6GJT"
130 FT /db_xref="UniProtKB/Swiss-Prot:P0CE18"
131 FT /protein_id="AAA91571.1"
132 FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA
133 FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI
134 FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF
135 FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS
136 FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
140 FT /product="hypothetical protein"
142 FT /db_xref="UniProtKB/Swiss-Prot:P0CE23"
143 FT /protein_id="AAA91572.1"
144 FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL
145 FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE"
149 FT /product="hypothetical protein"
150 FT /note="pGP5-D (gtg start codon)"
151 FT /db_xref="GOA:P10559"
152 FT /db_xref="InterPro:IPR025669"
153 FT /db_xref="InterPro:IPR027417"
154 FT /db_xref="UniProtKB/Swiss-Prot:P10559"
155 FT /protein_id="AAA91573.1"
156 FT /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVYT
157 FT SNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICIID
158 FT TPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIALSFW
159 FT DDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKL
160 FT THEIANILHIEYERDYSQRTT"
164 FT /product="hypothetical protein"
165 FT /note="pGP6-D (gtg start codon)"
166 FT /db_xref="InterPro:IPR005350"
167 FT /db_xref="UniProtKB/Swiss-Prot:P10560"
168 FT /protein_id="AAA91574.1"
169 FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL
170 FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS
171 FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK
172 FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM
173 FT CSGVSLSSYNENLLQQLFELFKQKS"
174 FT repeat_region 6857..6945
175 FT /note="four tandem 22bp repeats"
177 SQ Sequence 7502 BP; 2460 A; 1285 C; 1433 G; 2324 T; 0 other;
178 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca 60
179 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat 120
180 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat 180
181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg 240
182 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt 300
183 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt 360
184 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa 420
185 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac 480
186 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt 540
187 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc 600
188 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa 660
189 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca 720
190 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta 780
191 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct 840
192 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta 900
193 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg 960
194 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg 1020
195 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg 1080
196 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg 1140
197 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa 1200
198 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg 1260
199 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt 1320
200 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt 1380
201 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta 1440
202 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac 1500
203 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg 1560
204 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc 1620
205 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg 1680
206 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa 1740
207 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg 1800
208 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca 1860
209 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc 1920
210 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca 1980
211 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata 2040
212 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag 2100
213 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa 2160
214 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc 2220
215 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta 2280
216 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct 2340
217 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct 2400
218 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct 2460
219 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac 2520
220 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc 2580
221 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat 2640
222 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc 2700
223 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga 2760
224 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg 2820
225 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta 2880
226 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata 2940
227 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac 3000
228 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag 3060
229 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg 3120
230 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc 3180
231 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg 3240
232 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa 3300
233 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa 3360
234 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta 3420
235 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac 3480
236 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct 3540
237 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa 3600
238 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag 3660
239 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat 3720
240 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa 3780
241 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg 3840
242 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag 3900
243 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa 3960
244 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt 4020
245 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat 4080
246 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc 4140
247 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct 4200
248 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt 4260
249 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt 4320
250 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa 4380
251 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt 4440
252 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata 4500
253 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt 4560
254 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag 4620
255 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc 4680
256 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa 4740
257 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat 4800
258 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt 4860
259 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg 4920
260 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat 4980
261 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct 5040
262 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa 5100
263 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta 5160
264 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct 5220
265 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt 5280
266 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt 5340
267 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg 5400
268 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat 5460
269 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt 5520
270 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta 5580
271 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc 5640
272 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact 5700
273 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga 5760
274 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg 5820
275 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca 5880
276 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat 5940
277 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat 6000
278 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa 6060
279 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga 6120
280 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg 6180
281 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca 6240
282 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc 6300
283 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa 6360
284 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc 6420
285 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat 6480
286 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg 6540
287 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc 6600
288 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag 6660
289 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag 6720
290 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa 6780
291 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt 6840
292 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga 6900
293 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac 6960
294 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa 7020
295 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga 7080
296 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt 7140
297 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga 7200
298 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc 7260
299 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag 7320
300 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt 7380
301 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt 7440
302 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca 7500