1 LOCUS CH1L1CG 7502 bp DNA circular BCT 06-APR-2020
2 DEFINITION Chlamydia trachomatis plasmid pCHL1, complete sequence.
5 DBLINK BioSample: SAMN14225621
7 SOURCE Chlamydia trachomatis
8 ORGANISM Chlamydia trachomatis
9 Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
10 Chlamydia/Chlamydophila group; Chlamydia.
11 REFERENCE 1 (bases 1 to 7502)
12 AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
13 TITLE Diversity of the Chlamydia trachomatis common plasmid in biovars
14 with different pathogenicity
15 JOURNAL Plasmid 23 (2), 149-154 (1990)
17 REFERENCE 2 (bases 1 to 7502)
18 AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
19 TITLE Direct Submission
20 JOURNAL Submitted (23-JUN-2010) Sclavo Research Centre, Siena, Italy
21 COMMENT Draft entry and computer-readable sequence kindly submitted by
23 ! CDS location split below (and this line added), for Jalview test purposes !
24 FEATURES Location/Qualifiers
26 /organism="Chlamydia trachomatis"
27 /mol_type="genomic DNA"
30 /isolation_source="trachoma"
38 /product="hypothetical protein"
39 /protein_id="AAA91567.1"
40 /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSL
41 EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT
42 KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ
43 GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG
44 RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR
45 ISCLSSRQSVCSYCSGEEVIPLVQTPTIL"
46 CDS complement(488..1480)
50 /product="hypothetical protein"
51 /protein_id="AAA91568.1"
52 /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV
53 IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT
54 SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL
55 QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT
56 EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI
57 TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
62 /product="hypothetical protein"
63 /protein_id="AAA91569.1"
64 /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS
65 HHKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS
66 HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI
67 RSARGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKG
68 NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE
69 KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFI
70 DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD
71 LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV
77 /product="hypothetical protein"
78 /protein_id="AAA91570.1"
79 /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI
80 GLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLE
81 AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL
82 SPIIRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPA
83 NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL
84 RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF
90 /product="hypothetical protein"
91 /protein_id="AAA91571.1"
92 /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA
93 AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQ
94 DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSG
95 SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTP
96 TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
101 /product="hypothetical protein"
102 /protein_id="AAA91572.1"
103 /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE
104 LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE
107 /note="pGP5-D (gtg start codon)"
110 /product="hypothetical protein"
111 /protein_id="AAA91573.1"
112 /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVY
113 TSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI
114 IDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL
115 SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED
116 ILKLTHEIANILHIEYERDYSQRTT"
118 /note="pGP6-D (gtg start codon)"
121 /product="hypothetical protein"
122 /protein_id="AAA91574.1"
123 /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS
124 LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH
125 FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG
126 DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI
127 LRIMCSGVSLSSYNENLLQQLFELFKQKS"
128 repeat_region 6857..6945
129 /note="four tandem 22bp repeats"
131 1 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca
132 61 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat
133 121 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat
134 181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg
135 241 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt
136 301 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt
137 361 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa
138 421 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac
139 481 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt
140 541 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc
141 601 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa
142 661 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca
143 721 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta
144 781 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct
145 841 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta
146 901 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg
147 961 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg
148 1021 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg
149 1081 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg
150 1141 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa
151 1201 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg
152 1261 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt
153 1321 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt
154 1381 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta
155 1441 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac
156 1501 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg
157 1561 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc
158 1621 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg
159 1681 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa
160 1741 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg
161 1801 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca
162 1861 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc
163 1921 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca
164 1981 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata
165 2041 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag
166 2101 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa
167 2161 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc
168 2221 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta
169 2281 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct
170 2341 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct
171 2401 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct
172 2461 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac
173 2521 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc
174 2581 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat
175 2641 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc
176 2701 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga
177 2761 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg
178 2821 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta
179 2881 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata
180 2941 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac
181 3001 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag
182 3061 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg
183 3121 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc
184 3181 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg
185 3241 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa
186 3301 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa
187 3361 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta
188 3421 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac
189 3481 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct
190 3541 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa
191 3601 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag
192 3661 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat
193 3721 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa
194 3781 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg
195 3841 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag
196 3901 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa
197 3961 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt
198 4021 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat
199 4081 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc
200 4141 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct
201 4201 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt
202 4261 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt
203 4321 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa
204 4381 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt
205 4441 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata
206 4501 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt
207 4561 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag
208 4621 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc
209 4681 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa
210 4741 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat
211 4801 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt
212 4861 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg
213 4921 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat
214 4981 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct
215 5041 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa
216 5101 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta
217 5161 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct
218 5221 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt
219 5281 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt
220 5341 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg
221 5401 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat
222 5461 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt
223 5521 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta
224 5581 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc
225 5641 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact
226 5701 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga
227 5761 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg
228 5821 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca
229 5881 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat
230 5941 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat
231 6001 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa
232 6061 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga
233 6121 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg
234 6181 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca
235 6241 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc
236 6301 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa
237 6361 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc
238 6421 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat
239 6481 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg
240 6541 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc
241 6601 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag
242 6661 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag
243 6721 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa
244 6781 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt
245 6841 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga
246 6901 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac
247 6961 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa
248 7021 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga
249 7081 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt
250 7141 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga
251 7201 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc
252 7261 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag
253 7321 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt
254 7381 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt
255 7441 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca