JAL-1988 JAL-3130 New jlinked JRE in jalview_java2 with modules. Still needs jaxws...
[jalview.git] / test / jalview / io / testProps.jvprops
1 #---JalviewX Properties File---
2 #Fri Apr 25 09:54:25 BST 2014
3 SCREEN_Y=768
4 SCREEN_X=936
5 SHOW_WSDISCOVERY_ERRORS=true
6 LATEST_VERSION=2.8.0b1
7 SHOW_CONSERVATION=true
8 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
9 JAVA_CONSOLE_SCREEN_WIDTH=450
10 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
11 ID_ITALICS=true
12 SORT_ALIGNMENT=No sort
13 SHOW_IDENTITY=true
14 WSMENU_BYHOST=false
15 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
16 SHOW_FULLSCREEN=false
17 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
18 FONT_NAME=SansSerif
19 BLC_JVSUFFIX=true
20 VERSION_CHECK=false
21 YEAR=2011
22 SHOW_DBREFS_TOOLTIP=true
23 MSF_JVSUFFIX=true
24 SCREENGEOMETRY_HEIGHT=1600
25 JAVA_CONSOLE_SCREEN_Y=475
26 JAVA_CONSOLE_SCREEN_X=830
27 PFAM_JVSUFFIX=true
28 PIR_JVSUFFIX=true
29 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
30 JAVA_CONSOLE_SCREEN_HEIGHT=162
31 PIR_MODELLER=false
32 GAP_SYMBOL=-
33 SHOW_QUALITY=true
34 SHOW_OCCUPANCY=true
35 SHOW_GROUP_CONSERVATION=false
36 SHOW_JWS2_SERVICES=true
37 SHOW_NPFEATS_TOOLTIP=true
38 FONT_STYLE=plain
39 ANTI_ALIAS=false
40 SORT_BY_TREE=false
41 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
42 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
43 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
44 SHOW_GROUP_CONSENSUS=false
45 SHOW_CONSENSUS_HISTOGRAM=true
46 SHOW_OVERVIEW=false
47 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
48 FIGURE_AUTOIDWIDTH=false
49 SCREEN_WIDTH=900
50 ANNOTATIONCOLOUR_MIN=ffc800
51 SHOW_STARTUP_FILE=false
52 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
53 DEFAULT_FILE_FORMAT=FASTA
54 SHOW_JAVA_CONSOLE=false
55 VERSION=2.8b1
56 FIGURE_USERIDWIDTH=
57 WSMENU_BYTYPE=false
58 DEFAULT_COLOUR=None
59 NOQUESTIONNAIRES=true
60 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
61 BUILD_DATE=01 November 2013
62 PILEUP_JVSUFFIX=true
63 SHOW_CONSENSUS_LOGO=false
64 SCREENGEOMETRY_WIDTH=2560
65 SHOW_ANNOTATIONS=true
66 JALVIEW_RSS_WINDOW_SCREEN_Y=0
67 USAGESTATS=false
68 JALVIEW_RSS_WINDOW_SCREEN_X=0
69 SHOW_UNCONSERVED=false
70 SHOW_JVSUFFIX=true
71 DAS_LOCAL_SOURCE=
72 SCREEN_HEIGHT=650
73 ANNOTATIONCOLOUR_MAX=ff0000
74 AUTO_CALC_CONSENSUS=true
75 FASTA_JVSUFFIX=true
76 DAS_ACTIVE_SOURCE=uniprot\t
77 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
78 PAD_GAPS=false
79 CLUSTAL_JVSUFFIX=true
80 SHOW_ENFIN_SERVICES=true
81 FONT_SIZE=10
82 RIGHT_ALIGN_IDS=false
83 USE_PROXY=false
84 WRAP_ALIGNMENT=false
85 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
86 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
87 logs.Jalview.level=DEBUG