2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 package jalview.schemes;
21 import jalview.api.analysis.ScoreModelI;
25 import org.junit.Test;
28 public class ScoreMatrixPrinter
31 public void printAllMatrices()
33 for (Map.Entry<String,ScoreModelI> sm: ResidueProperties.scoreMatrices.entrySet())
35 System.out.println("Matrix "+sm.getKey());
36 System.out.println(sm.getValue().toString());
40 public void printHTMLMatrices()
42 for (Map.Entry<String,ScoreModelI> _sm: ResidueProperties.scoreMatrices.entrySet())
44 if (_sm.getValue() instanceof ScoreMatrix)
46 ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
47 System.out.println("Matrix "+_sm.getKey());
48 System.out.println(sm.outputMatrix(true));