2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.schemes;
23 import jalview.api.analysis.ScoreModelI;
27 import org.junit.Test;
30 public class ScoreMatrixPrinter
33 public void printAllMatrices()
35 for (Map.Entry<String,ScoreModelI> sm: ResidueProperties.scoreMatrices.entrySet())
37 System.out.println("Matrix "+sm.getKey());
38 System.out.println(sm.getValue().toString());
42 public void printHTMLMatrices()
44 for (Map.Entry<String,ScoreModelI> _sm: ResidueProperties.scoreMatrices.entrySet())
46 if (_sm.getValue() instanceof ScoreMatrix)
48 ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
49 System.out.println("Matrix "+_sm.getKey());
50 System.out.println(sm.outputMatrix(true));