2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.structure;
23 import static org.testng.Assert.assertEquals;
24 import static org.testng.Assert.assertFalse;
25 import static org.testng.Assert.assertTrue;
27 import java.util.List;
29 import org.testng.annotations.Test;
31 public class AtomSpecModelTest
33 @Test(groups = "Functional")
34 public void testGetRanges()
36 AtomSpecModel model = new AtomSpecModel();
37 assertFalse(model.getModels().iterator().hasNext());
38 List<int[]> ranges = model.getRanges("1", "A");
39 assertTrue(ranges.isEmpty());
41 model.addRange("1", 12, 14, "A");
42 assertTrue(model.getRanges("1", "B").isEmpty());
43 assertTrue(model.getRanges("2", "A").isEmpty());
44 ranges = model.getRanges("1", "A");
45 assertEquals(ranges.size(), 1);
46 int[] range = ranges.get(0);
47 assertEquals(range[0], 12);
48 assertEquals(range[1], 14);
51 * add some ranges; they should be coalesced and
52 * ordered when retrieved
54 model.addRange("1", 25, 25, "A");
55 model.addRange("1", 20, 24, "A");
56 model.addRange("1", 6, 8, "A");
57 model.addRange("1", 13, 18, "A");
58 model.addRange("1", 5, 6, "A");
59 ranges = model.getRanges("1", "A");
60 assertEquals(ranges.size(), 3);
61 range = ranges.get(0);
62 assertEquals(range[0], 5);
63 assertEquals(range[1], 8);
64 range = ranges.get(1);
65 assertEquals(range[0], 12);
66 assertEquals(range[1], 18);
67 range = ranges.get(2);
68 assertEquals(range[0], 20);
69 assertEquals(range[1], 25);