test/jalview/testProps.jvprops

   1 #---JalviewX Properties File---
   2 #Fri Apr 25 09:54:25 BST 2014
   3 SCREEN_Y=768
   4 SCREEN_X=936
   5 SHOW_WSDISCOVERY_ERRORS=true
   6 LATEST_VERSION=2.8.0b1
   7 SHOW_CONSERVATION=true
   8 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
   9 JAVA_CONSOLE_SCREEN_WIDTH=450
  10 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  11 ID_ITALICS=true
  12 SORT_ALIGNMENT=No sort
  13 SHOW_IDENTITY=true
  14 WSMENU_BYHOST=false
  15 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  16 SHOW_FULLSCREEN=false
  17 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  18 FONT_NAME=SansSerif
  19 BLC_JVSUFFIX=true
  20 VERSION_CHECK=false
  21 YEAR=2011
  22 SHOW_DBREFS_TOOLTIP=true
  23 MSF_JVSUFFIX=true
  24 SCREENGEOMETRY_HEIGHT=1600
  25 JAVA_CONSOLE_SCREEN_Y=475
  26 JAVA_CONSOLE_SCREEN_X=830
  27 PFAM_JVSUFFIX=true
  28 PIR_JVSUFFIX=true
  29 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
  30 JAVA_CONSOLE_SCREEN_HEIGHT=162
  31 PIR_MODELLER=false
  32 GAP_SYMBOL=-
  33 SHOW_QUALITY=true
  34 SHOW_GROUP_CONSERVATION=false
  35 SHOW_JWS2_SERVICES=true
  36 SHOW_NPFEATS_TOOLTIP=true
  37 FONT_STYLE=plain
  38 ANTI_ALIAS=false
  39 SORT_BY_TREE=false
  40 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
  41 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
  42 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
  43 SHOW_GROUP_CONSENSUS=false
  44 SHOW_CONSENSUS_HISTOGRAM=true
  45 SHOW_OVERVIEW=false
  46 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  47 FIGURE_AUTOIDWIDTH=false
  48 SCREEN_WIDTH=900
  49 ANNOTATIONCOLOUR_MIN=ffc800
  50 SHOW_STARTUP_FILE=false
  51 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  52 DEFAULT_FILE_FORMAT=FASTA
  53 SHOW_JAVA_CONSOLE=false
  54 VERSION=2.8b1
  55 FIGURE_USERIDWIDTH=
  56 WSMENU_BYTYPE=false
  57 DEFAULT_COLOUR=None
  58 NOQUESTIONNAIRES=true
  59 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
  60 BUILD_DATE=01 November 2013
  61 PILEUP_JVSUFFIX=true
  62 SHOW_CONSENSUS_LOGO=false
  63 SCREENGEOMETRY_WIDTH=2560
  64 SHOW_ANNOTATIONS=true
  65 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  66 USAGESTATS=false
  67 JALVIEW_RSS_WINDOW_SCREEN_X=0
  68 SHOW_UNCONSERVED=false
  69 SHOW_JVSUFFIX=true
  70 DAS_LOCAL_SOURCE=
  71 SCREEN_HEIGHT=650
  72 ANNOTATIONCOLOUR_MAX=ff0000
  73 AUTO_CALC_CONSENSUS=true
  74 FASTA_JVSUFFIX=true
  75 DAS_ACTIVE_SOURCE=uniprot\t
  76 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  77 PAD_GAPS=false
  78 CLUSTAL_JVSUFFIX=true
  79 SHOW_ENFIN_SERVICES=true
  80 FONT_SIZE=10
  81 RIGHT_ALIGN_IDS=false
  82 USE_PROXY=false
  83 WRAP_ALIGNMENT=false
  84 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
  85 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/