3 import static org.testng.AssertJUnit.assertEquals;
4 import static org.testng.AssertJUnit.assertNull;
5 import org.testng.annotations.Test;
6 import java.util.Arrays;
9 public class ShiftListTest
13 public void testParseMap()
15 assertNull(ShiftList.parseMap(null));
16 assertNull(ShiftList.parseMap(new int[]
20 * Gap map showing residues in aligned positions 2,3,6,8,9,10,12
23 { 2, 3, 6, 8, 9, 10, 12 };
24 List<int[]> shifts = ShiftList.parseMap(gm).getShifts();
25 assertEquals(4, shifts.size());
27 // TODO are these results (which pass) correct??
28 assertEquals("[0, 2]", Arrays.toString(shifts.get(0)));
29 assertEquals("[4, 2]", Arrays.toString(shifts.get(1)));
30 assertEquals("[7, 1]", Arrays.toString(shifts.get(2)));
31 assertEquals("[11, 1]", Arrays.toString(shifts.get(3)));