2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.gui;
23 import static org.junit.Assert.*;
24 import jalview.gui.WsJobParameters;
25 import jalview.util.MessageManager;
26 import jalview.ws.jabaws.JalviewJabawsTestUtils;
27 import jalview.ws.jws2.JabaPreset;
28 import jalview.ws.jws2.Jws2Discoverer;
29 import jalview.ws.jws2.jabaws2.Jws2Instance;
31 import java.awt.BorderLayout;
32 import java.awt.event.WindowEvent;
33 import java.awt.event.WindowListener;
34 import java.util.ArrayList;
35 import java.util.Iterator;
36 import java.util.List;
38 import javax.swing.JFrame;
39 import javax.swing.JPanel;
41 import org.junit.BeforeClass;
42 import org.junit.Test;
44 import compbio.metadata.Option;
45 import compbio.metadata.Parameter;
46 import compbio.metadata.Preset;
47 import compbio.metadata.PresetManager;
49 public class Jws2ParamView
52 * which services to test
54 public static List<String> serviceTests = new ArrayList<String>();
57 * which presets to test for services
59 public static List<String> presetTests = new ArrayList<String>();
62 serviceTests.add("AAConWS".toLowerCase());
65 public static Jws2Discoverer disc = null;
68 public static void setUpBeforeClass() throws Exception
70 disc = JalviewJabawsTestUtils.getJabawsDiscoverer();
75 public void testJws2Gui()
77 Jws2Instance lastserv = null;
78 Iterator<String> presetEnum = presetTests.iterator();
79 for (Jws2Instance service : disc.getServices())
82 if (serviceTests.size() == 0
83 || serviceTests.contains(service.serviceType.toLowerCase()))
87 List<Preset> prl = null;
89 if (presetEnum.hasNext())
91 PresetManager prman = lastserv.getPresets();
94 pr = prman.getPresetByName(presetEnum.next());
97 // just grab the last preset.
98 prl = prman.getPresets();
104 PresetManager prman = lastserv.getPresets();
107 prl = prman.getPresets();
110 Iterator<Preset> en = (prl == null) ? null : prl.iterator();
111 while (en != null && en.hasNext())
122 System.out.println("Testing opts dupes for "
123 + lastserv.getUri() + " : "
124 + lastserv.getActionText() + ":" + pr.getName());
125 List<Option> rg = lastserv.getRunnerConfig().getOptions();
130 Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
131 } catch (Exception e)
133 System.err.println("Failed to copy " + o.getName());
137 System.err.println("Failed to copy " + o.getName());
143 System.out.println("Testing param dupes:");
144 List<Parameter> rg = lastserv.getRunnerConfig()
146 for (Parameter o : rg)
150 Parameter cpy = jalview.ws.jws2.ParameterUtils
152 } catch (Exception e)
154 System.err.println("Failed to copy " + o.getName());
158 System.err.println("Failed to copy " + o.getName());
164 System.out.println("Testing param write:");
165 List<String> writeparam = null, readparam = null;
168 writeparam = jalview.ws.jws2.ParameterUtils
170 pr.getArguments(lastserv.getRunnerConfig()),
172 System.out.println("Testing param read :");
173 List<Option> pset = jalview.ws.jws2.ParameterUtils
174 .processParameters(writeparam,
175 lastserv.getRunnerConfig(), " ");
176 readparam = jalview.ws.jws2.ParameterUtils
177 .writeParameterSet(pset, " ");
178 Iterator<String> o = pr.getOptions().iterator(), s = writeparam
179 .iterator(), t = readparam.iterator();
180 boolean failed = false;
181 while (s.hasNext() && t.hasNext())
183 String on = o.next(), sn = s.next(), st = t.next();
186 System.out.println("Original was " + on
187 + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
194 System.out.println("Original parameters:\n"
196 System.out.println("Wrote parameters in first set:\n"
198 System.out.println("Wrote parameters in second set:\n"
202 } catch (Exception e)
207 WsJobParameters pgui = new WsJobParameters(lastserv,
208 new JabaPreset(lastserv, pr));
209 JFrame jf = new JFrame(MessageManager.formatMessage("label.ws_parameters_for", new String[]{lastserv.getActionText()}));
210 JPanel cont = new JPanel(new BorderLayout());
212 cont.setPreferredSize(pgui.getPreferredSize());
213 cont.add(pgui, BorderLayout.CENTER);
214 jf.setLayout(new BorderLayout());
215 jf.add(cont, BorderLayout.CENTER);
217 final Thread thr = Thread.currentThread();
218 jf.addWindowListener(new WindowListener()
221 public void windowActivated(WindowEvent e)
223 // TODO Auto-generated method stub
227 public void windowClosed(WindowEvent e)
231 public void windowClosing(WindowEvent e)
237 public void windowDeactivated(WindowEvent e)
239 // TODO Auto-generated method stub
243 public void windowDeiconified(WindowEvent e)
245 // TODO Auto-generated method stub
249 public void windowIconified(WindowEvent e)
251 // TODO Auto-generated method stub
255 public void windowOpened(WindowEvent e)
257 // TODO Auto-generated method stub
263 boolean inter = false;
269 } catch (Exception e)