2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.ws.gui;
20 import static org.junit.Assert.*;
21 import jalview.gui.WsJobParameters;
22 import jalview.ws.jabaws.JalviewJabawsTestUtils;
23 import jalview.ws.jws2.JabaPreset;
24 import jalview.ws.jws2.Jws2Discoverer;
25 import jalview.ws.jws2.jabaws2.Jws2Instance;
27 import java.awt.BorderLayout;
28 import java.awt.event.WindowEvent;
29 import java.awt.event.WindowListener;
30 import java.util.ArrayList;
31 import java.util.Iterator;
32 import java.util.List;
34 import javax.swing.JFrame;
35 import javax.swing.JPanel;
37 import org.junit.BeforeClass;
38 import org.junit.Test;
40 import compbio.metadata.Option;
41 import compbio.metadata.Parameter;
42 import compbio.metadata.Preset;
43 import compbio.metadata.PresetManager;
45 public class Jws2ParamView
48 * which services to test
50 public static List<String> serviceTests = new ArrayList<String>();
53 * which presets to test for services
55 public static List<String> presetTests = new ArrayList<String>();
58 serviceTests.add("AAConWS".toLowerCase());
61 public static Jws2Discoverer disc=null;
63 public static void setUpBeforeClass() throws Exception
65 disc = JalviewJabawsTestUtils.getJabawsDiscoverer();
69 public void testJws2Gui()
71 Jws2Instance lastserv = null;
72 Iterator<String> presetEnum = presetTests.iterator();
73 for (Jws2Instance service : disc.getServices())
76 if (serviceTests.size() == 0
77 || serviceTests.contains(service.serviceType.toLowerCase()))
81 List<Preset> prl = null;
83 if (presetEnum.hasNext())
85 PresetManager prman = lastserv.getPresets();
88 pr = prman.getPresetByName(presetEnum.next());
91 // just grab the last preset.
92 prl = prman.getPresets();
98 PresetManager prman = lastserv.getPresets();
101 prl = prman.getPresets();
104 Iterator<Preset> en = (prl == null) ? null : prl.iterator();
105 while (en != null && en.hasNext())
116 System.out.println("Testing opts dupes for "
117 + lastserv.getUri() + " : "
118 + lastserv.getActionText() + ":" + pr.getName());
119 List<Option> rg = lastserv.getRunnerConfig().getOptions();
124 Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
125 } catch (Exception e)
127 System.err.println("Failed to copy " + o.getName());
131 System.err.println("Failed to copy " + o.getName());
137 System.out.println("Testing param dupes:");
138 List<Parameter> rg = lastserv.getRunnerConfig()
140 for (Parameter o : rg)
144 Parameter cpy = jalview.ws.jws2.ParameterUtils
146 } catch (Exception e)
148 System.err.println("Failed to copy " + o.getName());
152 System.err.println("Failed to copy " + o.getName());
158 System.out.println("Testing param write:");
159 List<String> writeparam = null, readparam = null;
162 writeparam = jalview.ws.jws2.ParameterUtils
164 pr.getArguments(lastserv.getRunnerConfig()),
166 System.out.println("Testing param read :");
167 List<Option> pset = jalview.ws.jws2.ParameterUtils
168 .processParameters(writeparam,
169 lastserv.getRunnerConfig(), " ");
170 readparam = jalview.ws.jws2.ParameterUtils
171 .writeParameterSet(pset, " ");
172 Iterator<String> o = pr.getOptions().iterator(), s = writeparam
173 .iterator(), t = readparam.iterator();
174 boolean failed = false;
175 while (s.hasNext() && t.hasNext())
177 String on = o.next(), sn = s.next(), st = t.next();
180 System.out.println("Original was " + on
181 + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
188 System.out.println("Original parameters:\n"
190 System.out.println("Wrote parameters in first set:\n"
192 System.out.println("Wrote parameters in second set:\n"
196 } catch (Exception e)
201 WsJobParameters pgui = new WsJobParameters(lastserv,
202 new JabaPreset(lastserv, pr));
203 JFrame jf = new JFrame("Parameters for "
204 + lastserv.getActionText());
205 JPanel cont = new JPanel(new BorderLayout());
207 cont.setPreferredSize(pgui.getPreferredSize());
208 cont.add(pgui, BorderLayout.CENTER);
209 jf.setLayout(new BorderLayout());
210 jf.add(cont, BorderLayout.CENTER);
212 final Thread thr = Thread.currentThread();
213 jf.addWindowListener(new WindowListener()
216 public void windowActivated(WindowEvent e)
218 // TODO Auto-generated method stub
222 public void windowClosed(WindowEvent e)
226 public void windowClosing(WindowEvent e)
232 public void windowDeactivated(WindowEvent e)
234 // TODO Auto-generated method stub
238 public void windowDeiconified(WindowEvent e)
240 // TODO Auto-generated method stub
244 public void windowIconified(WindowEvent e)
246 // TODO Auto-generated method stub
250 public void windowOpened(WindowEvent e)
252 // TODO Auto-generated method stub
258 boolean inter = false;
264 } catch (Exception e)