2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.jws2;
23 import java.util.Locale;
25 import static org.testng.AssertJUnit.assertEquals;
26 import static org.testng.AssertJUnit.assertFalse;
27 import static org.testng.AssertJUnit.assertTrue;
29 import jalview.bin.Cache;
30 import jalview.gui.JvOptionPane;
31 import jalview.ws.jabaws.JalviewJabawsTestUtils;
32 import jalview.ws.jws2.jabaws2.Jws2Instance;
34 import java.util.ArrayList;
35 import java.util.Iterator;
36 import java.util.List;
38 import org.testng.annotations.BeforeClass;
39 import org.testng.annotations.Test;
41 import compbio.metadata.Option;
42 import compbio.metadata.Parameter;
43 import compbio.metadata.Preset;
44 import compbio.metadata.PresetManager;
45 import compbio.metadata.WrongParameterException;
48 * All methods in this class are set to the Network group because setUpBeforeClass will fail
49 * if there is no network.
51 @Test(singleThreaded = true)
52 public class ParameterUtilsTest
55 @BeforeClass(alwaysRun = true)
56 public void setUpJvOptionPane()
58 JvOptionPane.setInteractiveMode(false);
59 JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
63 * To limit tests to specify services, add them to this list; leave list empty
66 private static List<String> serviceTests = new ArrayList<String>();
68 private static Jws2Discoverer disc = null;
70 @BeforeClass(alwaysRun = true)
71 public static void setUpBeforeClass() throws Exception
73 serviceTests.add("AAConWS".toLowerCase(Locale.ROOT));
74 Cache.loadProperties("test/jalview/io/testProps.jvprops");
76 disc = JalviewJabawsTestUtils.getJabawsDiscoverer();
79 @Test(groups = { "Network" })
80 public void testWriteParameterSet() throws WrongParameterException
82 for (Jws2Instance service : disc.getServices())
84 if (isForTesting(service))
87 List<Preset> prl = null;
88 PresetManager prman = service.getPresets();
93 prl = prman.getPresets();
100 List<String> writeparam = null;
101 List<String> readparam = null;
102 writeparam = ParameterUtils.writeParameterSet(
103 pr.getArguments(service.getRunnerConfig()), " ");
104 List<Option> pset = ParameterUtils.processParameters(writeparam,
105 service.getRunnerConfig(), " ");
106 readparam = ParameterUtils.writeParameterSet(pset, " ");
107 Iterator<String> o = pr.getOptions().iterator();
108 Iterator<String> s = writeparam.iterator();
109 Iterator<String> t = readparam.iterator();
110 boolean failed = false;
111 while (s.hasNext() && t.hasNext())
113 String on = o.next();
114 String sn = s.next();
115 String st = t.next();
116 final String errorMsg = "Original was " + on
117 + " Phase 1 wrote " + sn + "\tPhase 2 wrote " + st;
118 assertEquals(errorMsg, sn, st);
119 assertEquals(errorMsg, sn, on);
127 * Returns true if the service is in the list of the ones we chose to test,
128 * _or_ the list is empty (test all)
133 public boolean isForTesting(Jws2Instance service)
135 return serviceTests.size() == 0
136 || serviceTests.contains(service.serviceType.toLowerCase(Locale.ROOT));
139 @Test(groups = { "Network" })
140 public void testCopyOption()
142 for (Jws2Instance service : disc.getServices())
144 if (isForTesting(service))
146 List<Option<?>> options = service.getRunnerConfig().getOptions();
147 for (Option<?> o : options)
149 System.out.println("Testing copyOption for option " + o.getName()
150 + " of " + service.getActionText());
151 Option<?> cpy = ParameterUtils.copyOption(o);
152 assertTrue(cpy.equals(o));
153 assertEquals(cpy.getName(), o.getName());
154 assertFalse(cpy == o);
155 // todo more assertions?
163 @Test(groups = { "Network" })
164 public void testCopyParameter()
166 for (Jws2Instance service : disc.getServices())
168 if (isForTesting(service))
170 List<Parameter> parameters = service.getRunnerConfig()
172 for (Parameter o : parameters)
174 System.out.println("Testing copyParameter for parameter "
175 + o.getName() + " of " + service.getActionText());
176 Parameter cpy = ParameterUtils.copyParameter(o);
177 assertTrue(cpy.equals(o));
178 assertFalse(cpy == o);
179 assertEquals(cpy.getName(), o.getName());
180 // todo more assertions?