1 <?xml version="1.0" encoding="UTF-8"?>
2 <mime-info xmlns="http://www.freedesktop.org/standards/shared-mime-info">
4 <mime-type type="application/x-jalview+xml+zip">
5 <comment>Jalview File</comment>
6 <generic-icon name="x-jalview-file"/>
7 <glob pattern="*.jvp" weight="100"/>
10 <mime-type type="chemical/x-cif">
11 <comment>CIF File</comment>
12 <generic-icon name="x-jalview-file"/>
13 <glob pattern="*.cif" weight="40"/>
16 <mime-type type="chemical/x-mmcif">
17 <comment>mmCIF File</comment>
18 <generic-icon name="x-jalview-file"/>
19 <glob pattern="*.mcif" weight="40"/>
20 <glob pattern="*.mmcif" weight="40"/>
23 <mime-type type="chemical/x-pdb">
24 <comment>PDB File</comment>
25 <generic-icon name="x-jalview-file"/>
26 <glob pattern="*.pdb" weight="40"/>
27 <glob pattern="*.ent" weight="40"/>
30 <mime-type type="application/x-amsa+txt">
31 <comment>AMSA File</comment>
32 <generic-icon name="x-jalview-file"/>
33 <glob pattern="*.amsa" weight="90"/>
36 <mime-type type="application/x-jalview-annotations+text">
37 <comment>Jalview Annotations File</comment>
38 <generic-icon name="x-jalview-file"/>
39 <glob pattern="*.annotations" weight="100"/>
40 <glob pattern="*.jvannotations" weight="100"/>
43 <mime-type type="application/x-jalview-biojson+json">
44 <comment>BioJSON File</comment>
45 <generic-icon name="x-jalview-file"/>
46 <glob pattern="*.biojson" weight="100"/>
49 <mime-type type="application/x-blc+txt">
50 <comment>BLC File</comment>
51 <generic-icon name="x-jalview-file"/>
52 <glob pattern="*.blc" weight="90"/>
55 <mime-type type="application/x-clustal+txt">
56 <comment>Clustal File</comment>
57 <generic-icon name="x-jalview-file"/>
58 <glob pattern="*.aln" weight="90"/>
61 <mime-type type="application/x-fasta+txt">
62 <comment>Fasta File</comment>
63 <generic-icon name="x-jalview-file"/>
64 <glob pattern="*.fa" weight="90"/>
65 <glob pattern="*.fasta" weight="90"/>
68 <mime-type type="application/x-jalview-features+text">
69 <comment>Jalview Features File</comment>
70 <generic-icon name="x-jalview-file"/>
71 <glob pattern="*.features" weight="100"/>
72 <glob pattern="*.jvfeatures" weight="100"/>
75 <mime-type type="application/x-gff2+txt">
76 <comment>Generic Features Format v2 File</comment>
77 <generic-icon name="x-jalview-file"/>
78 <glob pattern="*.gff2" weight="90"/>
81 <mime-type type="application/x-gff3+txt">
82 <comment>Generic Features Format v3 File</comment>
83 <generic-icon name="x-jalview-file"/>
84 <glob pattern="*.gff3" weight="90"/>
87 <mime-type type="application/x-jalview-jnet+text">
88 <comment>JnetFile File</comment>
89 <generic-icon name="x-jalview-file"/>
90 <glob pattern="*.concise" weight="100"/>
91 <glob pattern="*.jnet" weight="100"/>
94 <mime-type type="application/x-msf+txt">
95 <comment>MSF File</comment>
96 <generic-icon name="x-jalview-file"/>
97 <glob pattern="*.msf" weight="90"/>
100 <mime-type type="application/x-pfam+txt">
101 <comment>PFAM File</comment>
102 <generic-icon name="x-jalview-file"/>
103 <glob pattern="*.pfam" weight="90"/>
106 <mime-type type="application/x-phylip+txt">
107 <comment>PHYLIP File</comment>
108 <generic-icon name="x-jalview-file"/>
109 <glob pattern="*.phy" weight="90"/>
112 <mime-type type="application/x-pileup+txt">
113 <comment>PileUp File</comment>
114 <generic-icon name="x-jalview-file"/>
115 <glob pattern="*.pileup" weight="90"/>
118 <mime-type type="application/x-pir+txt">
119 <comment>PIR File</comment>
120 <generic-icon name="x-jalview-file"/>
121 <glob pattern="*.pir" weight="90"/>
124 <mime-type type="application/rnaml+xml">
125 <comment>RNAML File</comment>
126 <generic-icon name="x-jalview-file"/>
127 <glob pattern="*.rnaml" weight="90"/>
130 <mime-type type="application/x-jalview-scorematrix+text">
131 <comment>Substitution Matrix File</comment>
132 <generic-icon name="x-jalview-file"/>
133 <glob pattern="*.mat" weight="100"/>
136 <mime-type type="application/x-stockholm+txt">
137 <comment>Stockholm File</comment>
138 <generic-icon name="x-jalview-file"/>
139 <glob pattern="*.sto" weight="90"/>
140 <glob pattern="*.stk" weight="90"/>