2 #*******************************************************************************
3 # Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
4 # Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
6 # This file is part of Jalview.
8 # Jalview is free software: you can redistribute it and/or
9 # modify it under the terms of the GNU General Public License
10 # as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 # Jalview is distributed in the hope that it will be useful, but
13 # WITHOUT ANY WARRANTY; without even the implied warranty
14 # of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 # PURPOSE. See the GNU General Public License for more details.
17 # You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 #*******************************************************************************
20 # Splits a concatenated set of Stockholm Files into several individual files.
\r
34 if ($_=~/GF\s+AC\s+([0-9.RPF]+)/) {
\r
36 ($fh=new FileHandle)->open(">$ac.stk") or die("Couldn't open file '$ac.stk'");
\r
37 $lns=~/^. STOCKHOLM 1.0/ or $fh->print("# STOCKHOLM 1.0\n");
\r
40 if (defined $lns) {
\r
41 $fh->print($lns); $lns=undef; }
\r