website/version2/index.html

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   5 <TITLE>JalView - Java alignment editor</TITLE>\r
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  24           <table width="550" border="0">\r
  25             <tr>\r
  26               <td width="45%"><div align="center"><a href="http://www.compbio.dundee.ac.uk/~andrew/JalviewWebsite/index.html"><img src="../snap22med.gif" width="291" height="116" border="0"  align="absmiddle"></a></div></td>\r
  27               <td width="55%"><div align="center"><font size="+6"><strong><font face="Geneva, Arial, Helvetica, sans-serif">Jalview\r
  28                   </font></strong></font> </div>\r
  29                 <div align="center"><font size="3" face="Geneva, Arial, Helvetica, sans-serif">a\r
  30                   multiple alignment editor</font> </div></td>\r
  31             </tr>\r
  32           </table>\r
  33           </center></td>\r
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  36  <br>\r
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  39       <td width="197" valign="top" nowrap> <p><strong>Downloads</strong></p>\r
  40         <ul>\r
  41           <li><a href="index.html">Jalview</a></li>\r
  42         </ul>\r
  43         <strong>Examples</strong> <ul>\r
  44           <li><a href="examples/applets.html">Applet</a></li>\r
  45           <li><a href="examples/examples.html">Application</a></li>\r
  46         </ul>\r
  47         <strong>Reference</strong> <ul>\r
  48           <li> <a href="../jalview.pdf" target="_blank">&quot;The Jalview Java<br>\r
  49             Alignment Editor,&quot;<br>\r
  50             </a></li>\r
  51           <a href="../jalview.pdf"><em>Bioinformatics</em>, 12, 426-7</a>\r
  52         </ul>\r
  53         <strong>Source Code</strong> <ul>\r
  54           <li>Jalview 2</li>\r
  55         </ul>\r
  56         <p><strong>Feedback</strong></p>\r
  57         <p>&nbsp;&nbsp;&nbsp;<img src="../help.gif" width="151" height="43"> </p>\r
  58         <p><br>\r
  59           <a href="http://www.bbsrc.ac.uk/"> <img border="0"src="../bbsrc.jpg"></a>\r
  60         </p></td>\r
  61       <td width="499" valign="top"><!-- InstanceBeginEditable name="Contents" -->\r
  62         <p>Key features of Jalview Version 2:\r
  63         <ul>\r
  64           <li>Remote tools implemented as web services</li>\r
  65           <li>Remote alignments (<a href="http://www.ebi.ac.uk/clustalw/" target="CLUSTAL">Clustal</a>, <a href="http://www.drive5.com/muscle/" target="MUSCLE">Muscle</a>...)</li>\r
  66           <li>Remote alignment annotation (<a href="http://www.compbio.dundee.ac.uk/~www-jpred/" target="JPRED">JPred Secondary Structure Prediction</a>)</li>\r
  67           <li>Printing</li>\r
  68           <li>PNG, HTML, Encapsulated PostScript output</li>\r
  69         </ul>\r
  70         <p>Current development allows the Jalview Application to be distributed\r
  71           using Java Web Start which is installed with <a href="http://www.java.com/en/download/" target="JAVA">Java.</a>\r
  72           Each time the application is started via Java Web Start an automatic\r
  73           update is performed so that you will always be running the latest code.<br>\r
  74           <br>\r
  75           N.B. if you have a local installation of Java and clicking on the link\r
  76           below prompts the question &quot;Open using application...&quot;, locate\r
  77           your installation of Java Web Start - its called "javaws". Your web browser will now associate .jnlp\r
  78           files with Java Web Start<br>\r
  79           <br>\r
  80           Try it now.\r
  81         <center>\r
  82           <h2><a href="http://www.compbio.dundee.ac.uk/~andrew/JalviewWebsite/version2/webstart/JalviewX.jnlp">Start\r
  83             Jalview</a> </h2>\r
  84           <p>&nbsp;</p>\r
  85         </center>\r
  86         If you are having difficulties installing Java or would prefer not to\r
  87         use Java Web Start you could try installing Jalview from the following\r
  88         link.\r
  89         <p>\r
  90         <center>\r
  91           <h2><a  target="NEW" href="Web_Installers/install.htm">Install with InstallAnywhere</a>\r
  92           </h2>\r
  93         </center>\r
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