wiki/genetreepreprocessing.wiki

   1 = Gene tree Preprocessing =
   2
   3 == Usage ==
   4 {{{
   5 java -Xmx1024m -cp
   6 path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>
   7 }}}
   8
   9
  10
  11 == Details ==
  12
  13 Output is two files:
  14   * input-name_preprocessed_gene_tree.phylo.xml
  15   * input-name_removed_nodes.txt
  16
  17
  18 == Download ==
  19
  20 Download forester.jar here: http://code.google.com/p/forester/downloads/list