2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.dbsources;
23 import jalview.ws.seqfetcher.DbSourceProxy;
26 * Flyweight class specifying retrieval of Seed family alignments from RFAM
28 * @author Lauren Michelle Lui
31 public class RfamSeed extends Rfam implements DbSourceProxy
41 * @see jalview.ws.dbsources.Rfam#getRFAMURL()
43 protected String getXFAMURL()
45 return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
47 // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
53 * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
55 public String getDbName()
60 public String getDbSource()
62 return getDbName(); // so we have unique DbSource string.
65 public String getTestQuery()
68 } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
70 public String getDbVersion()