</fileset>
</classpath>
</taskdef>
+
+
<!-- utils is a class path to additional utilities needed for
building docs, jars and webstart stuff -->
<mkdir dir="${outputDir}"/>
<copy todir="${outputDir}">
<fileset dir=".">
-
<include name="${docDir}/**/*.*"/>
<include name="${helpDir}/**/*.*"/>
- <include name="${libDir}/*.*"/>
+ <include name="${libDir}/*.jar"/>
</fileset>
<fileset dir="${resourceDir}">
<include name="**/*.*"/>
<target name="build" depends="prepare">
<!-- not efficient yet. -->
- <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
- classpathref="build.classpath" />
+ <javac source="1.4" target="1.4"
+ srcdir ="${sourceDir}"
+ destdir="${outputDir}"
+ classpathref="build.classpath">
+ <exclude name="jalview/*applet*"/>
+ <exclude name="com/stevesoft/**"/>
+ </javac>
</target>
<target name="buildindices" depends="init, prepare"
unless="help.uptodate">
<jar destfile="${packageDir}/${outputJar}">
<fileset dir="${outputDir}/">
+ <exclude name="cache*/**"/>
<exclude name="*.jar" />
<exclude name="*.jar.*" />
<exclude name="**/*.jar" />
codebase="${WebStartLocation}">
<information>
<title>Jalview</title>
- <vendor>Barton Group</vendor>
+ <vendor>The Barton Group</vendor>
<homepage href="www.jalview.org"/>
<description>Jalview Multiple Alignment Editor</description>
<description kind="short">Jalview</description>
- <icon href="BartonGroupBanner.gif"/>
- </information>
+ <icon href="logo_big.gif"/>
+ <!--
+ <association mime-type="application-x/ext-file" extensions="fa"/>
+ <association mime-type="application-x/ext-file" extensions="fasta"/>
+ <association mime-type="application-x/ext-file" extensions="fastq"/>
+ <association mime-type="application-x/ext-file" extensions="blc"/>
+ <association mime-type="application-x/ext-file" extensions="msf"/>
+ <association mime-type="application-x/ext-file" extensions="pfam"/>
+ <association mime-type="application-x/ext-file" extensions="aln"/>
+ <association mime-type="application-x/ext-file" extensions="pir"/>
+ -->
+ </information>
<resources>
<j2se version="1.3+"/>
<fileset dir="${packageDir}">
<!-- jalopy code reformatter -->
<target name="sourcescrub" depends="init,build">
<jalopy destdir="jsrc" classpathref="run.classpath"
- convention="jalviewCodeConvention.xml">
+ convention="jalview-jalopy.xml">
<fileset dir="${sourceDir}">
<include name="*.java"/>
<include name="**/*.java"/>
</jalopy>
</target>
+
+
+ <!-- Compile, package and obfuscate Jalview Applet -->
+ <target name="makeApplet" depends="obfuscate"/>
+
+ <target name="compileApplet" depends="init,clean">
+ <mkdir dir="${outputDir}"/>
+ <javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
+ includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
+ excludes="ext/**,MCview/**,org/**,vamsas/**"/>
+ </target>
+
+ <target name="packageApplet" depends="compileApplet">
+ <jar destfile="in.jar">
+ <fileset dir="${outputDir}">
+ <include name="com/**"/>
+ <include name="jalview/**"/>
+ <include name="${resourceDir}/images/idwidth.gif"/>
+ </fileset>
+ </jar>
+ </target>
+
+ <target name="obfuscate" depends="packageApplet">
+ <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+ <proguard>
+ -libraryjars "${java.home}/lib/rt.jar"
+ -injars in.jar
+ -outjars jalviewApplet.jar
+ -keep public class jalview.bin.JalviewLite
+ </proguard>
+ <delete file="in.jar"/>
+ </target>
+
+
</project>