+--debug
--nonews
--nosplash
+--noannotation
--substitutions
--open={argfiledirname}/sample.a2m
--colour=gecos:flower
--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix="[label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json"
+--paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
+--tempfac=plddt
--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix="[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json"
+--paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
+--tempfac=plddt
--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix="[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json"
+--paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
+--tempfac=plddt
--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix="[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json"
+--paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
+--tempfac=plddt
--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix="[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json"
+--tempfac=plddt
+--paematrix={dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
--image={dirname}/{basename}.html
+#--headless