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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
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* This file is part of Jalview.
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<b>9</b> No. 6 (745-756)).
</ul>
<em><a
- href="http://www.compbio.dundee.ac.uk/papers/amas/amas3d.html"
- >View an HTML version of the paper</a></em>
+ href="http://www.compbio.dundee.ac.uk/papers/amas/amas3d.html">View
+ an HTML version of the paper</a></em>
</p>
<p>
Conservation is measured as a numerical index reflecting the
(e.g. !proline).
</p>
<p>
- <em>Colouring an alignment by conservation</em><br>
+ <strong>Colouring an alignment by conservation</strong><br>
Conservation scores can be used to colour an alignment. This is
explained further in the help page for <a
- href="../colourSchemes/conservation.html"
- >conservation colouring</a>.
+ href="../colourSchemes/conservation.html">conservation
+ colouring</a>.
+ </p>
+ <p>
+ <strong>Group conservation</strong><br> If sequence groups have
+ been defined, then selecting option 'Group Conservation' in the <a
+ href="../menus/alwannotation.html">Annotations menu</a> will
+ result in Conservation being calculated for each group, as well as
+ the alignment as a whole.
</p>
</body>
</html>