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<head><title>User Defined Colours</title></head>
<body>
-<p><em>User Defined Colours</em></p>
-<p><img src="userDefined.gif" width="719" height="368"> </p>
+<p><strong>User Defined Colours</strong></p>
+<p><img src="userDefined_java6.gif" width="815" height="402"> </p>
<p>You may define any number of new colour schemes, each with a unique name. <br>
<br>
- Each of the residues in a new colour scheme may be assigned a new user defined
- colour. <br>
- <br>
- Click "Apply" or "OK" to set your new colours on the active
- alignment window. </p>
-<p>Click "Cancel" to undo your changes if you pressed the "Apply"
- button. <br>
- <br>
- If you save your colour scheme with a unique name the colour scheme name will
- be added to the "Colour" menu on each new alignment window.<br>
+ Each of the residues in a colour scheme may be assigned any chosen colour. <br>
+ Select one or more residues, then select the desired colour.<br/>
+ Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.<br/>
+ Note that the currently selected buttons are highlighted by a lighter text colour.
+ <p>
+ The <strong>Case Sensitive</strong> option allows you to choose distinct colours for upper and
+ lower case residue codes.
+ <p>
+ Click <strong>Apply</strong> or <strong>OK</strong> to set your new colours on the active
+ alignment window.<br/>
+ Click <strong>Cancel</strong> to undo your changes if you pressed the <strong>Apply</strong>
+ button.
+ </p>
+ If you save your colour scheme with a unique name, the colour scheme name will
+ be added to the <strong>Colour</strong> menu on each new alignment window.<br>
<br>
Any saved colour schemes will be automatically loaded the next time you use
- Jalview.</p>
+ Jalview.
+ <br><br>
+ <em>Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is
+ currently supported (for reasons of available screen space).</em>
+ <p/>
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