retrieve annotated transcripts, peptides and genomic contigs from
<a href="http://www.ensembl.org">ENSEMBL</a>.
<br />
- <img src="selectfetchdb.gif" align="left" width="480" height="204"
- alt="Database selection dialog for fetching sequences (introduced in Jalview 2.8)">
+ <img src="selectfetchdb.gif" align="right" width="480" height="204"
+ alt="Database selection dialog with Ensembl sequence source tooltip">
- <p>
- Two types of ENSEMBL source are provided. ENSEMBL queries the main
- ENSEMBL warehouse containing data for higher eukaryotes, and
+ <p>Two types of ENSEMBL source are provided. ENSEMBL queries the
+ main ENSEMBL warehouse containing data for higher eukaryotes, and
EnsemblGenomes, which queries Ensembl Pathogens, and other
- warehouses.<br />
- <em>Ensembl support is new in Jalview, and we expect to merge
- these sources in a future release.</em>
- </p>
+ warehouses.</p>
<p>
- <strong>General Use</strong><br /> If you have a set of Ensembl gene
- or transcript IDs, then you can retrieve them <em>via</em> the
+ <strong>General Use</strong><br /> If you have a set of Ensembl
+ gene or transcript IDs, then you can retrieve them <em>via</em> the
sequence fetcher dialog opened after selecting the most appropriate
source (either 'ENSEMBL', or Ensembl Genomes). However, Jalview's
Ensembl client has a couple of additional capabilities: