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JAL-674 patch for duplicate row bug
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignSeq.java
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
e7fed8d
..
d05aa96
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-1113,7
+1113,7
@@
public class AlignSeq
if (removeOldAnnots) {
annotations.remove(ap);
} else {
- AlignmentAnnotation alan = annotations.get(ap);
+ AlignmentAnnotation alan = annotations.remove(ap);
alan.liftOver(sq, sp2sq);
alan.setSequenceRef(sq);
sq.addAlignmentAnnotation(alan);