\r
for (j = 1; j <= len; j++)\r
{\r
- sqnum[j] = ((Integer) jalview.schemes.ResidueProperties.aaHash.get(Character.toString(\r
+ sqnum[j] = ((Integer) jalview.schemes.ResidueProperties.aaHash.get(String.valueOf(\r
sq.charAt(j - 1)))).intValue(); // yuk - JBPNote - case taken care of in aaHash\r
}\r
\r
\r
if (sequence.length() > i)\r
{\r
- res = Character.toString(Character.toUpperCase(sequence.charAt(i)));\r
+ res = String.valueOf(Character.toUpperCase(sequence.charAt(i)));\r
\r
if (residueHash.containsKey(res))\r
{\r