import jalview.datamodel.SearchResults;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceGroup;
+import jalview.jsdev.RegExp;
+import jalview.jsdev.api.RegExpInterface;
import jalview.util.Comparison;
import java.util.Vector;
-import com.stevesoft.pat.Regex;
+//import com.stevesoft.pat.Regex;
public class Finder
{
boolean findAll = false;
- Regex regex = null;
+ RegExpInterface regex = null;
/**
* hold's last-searched position between calles to find(false)
{
searchString = searchString.toUpperCase();
}
- regex = new Regex(searchString);
+ regex = RegExp.newRegex(searchString);
regex.setIgnoreCase(!caseSensitive);
searchResults = new SearchResults();
idMatch = new Vector();
/**
* @return the regex
*/
- public Regex getRegex()
+ public RegExpInterface getRegex()
{
return regex;
}