package jalview.analysis;
import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.HiddenMarkovModel;
import jalview.datamodel.PDBEntry;
{
if (sqinfo.features.isPresent())
{
- Cache.log.warn("Setting dataset sequence for a sequence which has " +
+ Console.warn("Setting dataset sequence for a sequence which has " +
"sequence features. Dataset sequence features will not be visible.");
assert false;
}
{
if (!quiet)
{
- Cache.log.warn(format("Can't find '%s' in uniquified alignment",
+ Console.warn(format("Can't find '%s' in uniquified alignment",
key));
}
}
} catch (ClassCastException ccastex) {
if (!quiet)
{
- Cache.log.error("Unexpected object in SeqSet map : "+ key.getClass());
+ Console.error("Unexpected object in SeqSet map : "+ key.getClass());
}
}
}
{
sb.append(", " + i.nextElement().getName());
}
- Cache.log.warn(sb.toString());
+ Console.warn(sb.toString());
return false;
}