/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
String mask = "0";
int maxWidth = 0;
int tmp;
- AlignmentI alignment=av.getAlignment();
+ AlignmentI alignment = av.getAlignment();
for (int i = 0; i < alignment.getHeight(); i++)
{
tmp = alignment.getSequenceAt(i).getEnd();
{
if ((bottom == -1)
&& (i >= alHeight || !group.getSequences(null)
- .contains(av.getAlignment().getSequenceAt(i + 1))))
+ .contains(
+ av.getAlignment().getSequenceAt(i + 1))))
{
bottom = sy + av.charHeight;
}
break;
}
- group = (SequenceGroup) av.getAlignment().getGroups().get(
- groupIndex);
+ group = (SequenceGroup) av.getAlignment().getGroups()
+ .get(groupIndex);
} while (groupIndex < av.getAlignment().getGroups().size());
}