* Schema.\r
* $Id$\r
*/\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-package jalview.binding;\r
\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
+package jalview.binding;\r
\r
//---------------------------------/\r
//- Imported classes and packages -/\r
//---------------------------------/\r
-import java.io.Serializable;\r
-\r
-import java.util.Enumeration;\r
-import java.util.Vector;\r
\r
+import java.util.*;\r
\r
/**\r
* Class JalviewModelSequence2Item.\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class JalviewModelSequence2Item implements java.io.Serializable {\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _userColourSchemeList\r
- */\r
- private java.util.Vector _userColourSchemeList;\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
- public JalviewModelSequence2Item() {\r
- super();\r
- _userColourSchemeList = new Vector();\r
+public class JalviewModelSequence2Item\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _userColourSchemeList\r
+ */\r
+ private java.util.Vector _userColourSchemeList;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public JalviewModelSequence2Item()\r
+ {\r
+ super();\r
+ _userColourSchemeList = new Vector();\r
+ } //-- jalview.binding.JalviewModelSequence2Item()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method addUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param vUserColourScheme\r
+ */\r
+ public void addUserColourScheme(jalview.binding.UserColourScheme\r
+ vUserColourScheme)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _userColourSchemeList.addElement(vUserColourScheme);\r
+ } //-- void addUserColourScheme(jalview.binding.UserColourScheme)\r
+\r
+ /**\r
+ * Method addUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @param vUserColourScheme\r
+ */\r
+ public void addUserColourScheme(int index,\r
+ jalview.binding.UserColourScheme\r
+ vUserColourScheme)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _userColourSchemeList.insertElementAt(vUserColourScheme, index);\r
+ } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)\r
+\r
+ /**\r
+ * Method enumerateUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateUserColourScheme()\r
+ {\r
+ return _userColourSchemeList.elements();\r
+ } //-- java.util.Enumeration enumerateUserColourScheme()\r
+\r
+ /**\r
+ * Method getUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @return UserColourScheme\r
+ */\r
+ public jalview.binding.UserColourScheme getUserColourScheme(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ( (index < 0) || (index > _userColourSchemeList.size()))\r
+ {\r
+ throw new IndexOutOfBoundsException();\r
}\r
- //-- jalview.binding.JalviewModelSequence2Item()\r
- //-----------/\r
\r
- public void addUserColourScheme(\r
- jalview.binding.UserColourScheme vUserColourScheme)\r
- throws java.lang.IndexOutOfBoundsException {\r
- _userColourSchemeList.addElement(vUserColourScheme);\r
- }\r
- //-- void addUserColourScheme(jalview.binding.UserColourScheme)\r
-\r
- /**\r
- * Method addUserColourScheme\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vUserColourScheme\r
- */\r
- public void addUserColourScheme(int index,\r
- jalview.binding.UserColourScheme vUserColourScheme)\r
- throws java.lang.IndexOutOfBoundsException {\r
- _userColourSchemeList.insertElementAt(vUserColourScheme, index);\r
- }\r
- //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)\r
-\r
- /**\r
- * Method enumerateUserColourScheme\r
- *\r
- *\r
- *\r
- * @return Enumeration\r
- */\r
- public java.util.Enumeration enumerateUserColourScheme() {\r
- return _userColourSchemeList.elements();\r
+ return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(\r
+ index);\r
+ } //-- jalview.binding.UserColourScheme getUserColourScheme(int)\r
+\r
+ /**\r
+ * Method getUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @return UserColourScheme\r
+ */\r
+ public jalview.binding.UserColourScheme[] getUserColourScheme()\r
+ {\r
+ int size = _userColourSchemeList.size();\r
+ jalview.binding.UserColourScheme[] mArray = new jalview.binding.\r
+ UserColourScheme[size];\r
+ for (int index = 0; index < size; index++)\r
+ {\r
+ mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.\r
+ elementAt(index);\r
}\r
- //-- java.util.Enumeration enumerateUserColourScheme()\r
-\r
- /**\r
- * Method getUserColourScheme\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return UserColourScheme\r
- */\r
- public jalview.binding.UserColourScheme getUserColourScheme(int index)\r
- throws java.lang.IndexOutOfBoundsException {\r
- //-- check bounds for index\r
- if ((index < 0) || (index > _userColourSchemeList.size())) {\r
- throw new IndexOutOfBoundsException();\r
- }\r
-\r
- return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);\r
+ return mArray;\r
+ } //-- jalview.binding.UserColourScheme[] getUserColourScheme()\r
+\r
+ /**\r
+ * Method getUserColourSchemeCount\r
+ *\r
+ *\r
+ *\r
+ * @return int\r
+ */\r
+ public int getUserColourSchemeCount()\r
+ {\r
+ return _userColourSchemeList.size();\r
+ } //-- int getUserColourSchemeCount()\r
+\r
+ /**\r
+ * Method removeAllUserColourScheme\r
+ *\r
+ */\r
+ public void removeAllUserColourScheme()\r
+ {\r
+ _userColourSchemeList.removeAllElements();\r
+ } //-- void removeAllUserColourScheme()\r
+\r
+ /**\r
+ * Method removeUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @return UserColourScheme\r
+ */\r
+ public jalview.binding.UserColourScheme removeUserColourScheme(int index)\r
+ {\r
+ java.lang.Object obj = _userColourSchemeList.elementAt(index);\r
+ _userColourSchemeList.removeElementAt(index);\r
+ return (jalview.binding.UserColourScheme) obj;\r
+ } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)\r
+\r
+ /**\r
+ * Method setUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @param vUserColourScheme\r
+ */\r
+ public void setUserColourScheme(int index,\r
+ jalview.binding.UserColourScheme\r
+ vUserColourScheme)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ( (index < 0) || (index > _userColourSchemeList.size()))\r
+ {\r
+ throw new IndexOutOfBoundsException();\r
}\r
- //-- jalview.binding.UserColourScheme getUserColourScheme(int)\r
-\r
- /**\r
- * Method getUserColourScheme\r
- *\r
- *\r
- *\r
- * @return UserColourScheme\r
- */\r
- public jalview.binding.UserColourScheme[] getUserColourScheme() {\r
- int size = _userColourSchemeList.size();\r
- jalview.binding.UserColourScheme[] mArray = new jalview.binding.UserColourScheme[size];\r
-\r
- for (int index = 0; index < size; index++) {\r
- mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);\r
- }\r
-\r
- return mArray;\r
+ _userColourSchemeList.setElementAt(vUserColourScheme, index);\r
+ } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)\r
+\r
+ /**\r
+ * Method setUserColourScheme\r
+ *\r
+ *\r
+ *\r
+ * @param userColourSchemeArray\r
+ */\r
+ public void setUserColourScheme(jalview.binding.UserColourScheme[]\r
+ userColourSchemeArray)\r
+ {\r
+ //-- copy array\r
+ _userColourSchemeList.removeAllElements();\r
+ for (int i = 0; i < userColourSchemeArray.length; i++)\r
+ {\r
+ _userColourSchemeList.addElement(userColourSchemeArray[i]);\r
}\r
- //-- jalview.binding.UserColourScheme[] getUserColourScheme()\r
-\r
- /**\r
- * Method getUserColourSchemeCount\r
- *\r
- *\r
- *\r
- * @return int\r
- */\r
- public int getUserColourSchemeCount() {\r
- return _userColourSchemeList.size();\r
- }\r
- //-- int getUserColourSchemeCount()\r
-\r
- /**\r
- * Method removeAllUserColourScheme\r
- *\r
- */\r
- public void removeAllUserColourScheme() {\r
- _userColourSchemeList.removeAllElements();\r
- }\r
- //-- void removeAllUserColourScheme()\r
-\r
- /**\r
- * Method removeUserColourScheme\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return UserColourScheme\r
- */\r
- public jalview.binding.UserColourScheme removeUserColourScheme(int index) {\r
- java.lang.Object obj = _userColourSchemeList.elementAt(index);\r
- _userColourSchemeList.removeElementAt(index);\r
-\r
- return (jalview.binding.UserColourScheme) obj;\r
- }\r
- //-- jalview.binding.UserColourScheme removeUserColourScheme(int)\r
-\r
- /**\r
- * Method setUserColourScheme\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vUserColourScheme\r
- */\r
- public void setUserColourScheme(int index,\r
- jalview.binding.UserColourScheme vUserColourScheme)\r
- throws java.lang.IndexOutOfBoundsException {\r
- //-- check bounds for index\r
- if ((index < 0) || (index > _userColourSchemeList.size())) {\r
- throw new IndexOutOfBoundsException();\r
- }\r
-\r
- _userColourSchemeList.setElementAt(vUserColourScheme, index);\r
- }\r
- //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)\r
-\r
- /**\r
- * Method setUserColourScheme\r
- *\r
- *\r
- *\r
- * @param userColourSchemeArray\r
- */\r
- public void setUserColourScheme(\r
- jalview.binding.UserColourScheme[] userColourSchemeArray) {\r
- //-- copy array\r
- _userColourSchemeList.removeAllElements();\r
-\r
- for (int i = 0; i < userColourSchemeArray.length; i++) {\r
- _userColourSchemeList.addElement(userColourSchemeArray[i]);\r
- }\r
- }\r
- //-- void setUserColourScheme(jalview.binding.UserColourScheme)\r
+ } //-- void setUserColourScheme(jalview.binding.UserColourScheme)\r
+\r
}\r