*/
package jalview.datamodel;
+import htsjdk.samtools.Cigar;
+
import java.util.List;
public class CigarArray extends CigarBase
* @param columnSelection
* @param selectionGroup
*/
- public CigarArray(AlignmentI alignment, ColumnSelection columnSelection,
+ public CigarArray(AlignmentI alignment, HiddenColumns hidden,
SequenceGroup selectionGroup)
{
this(constructSeqCigarArray(alignment, selectionGroup));
constructFromAlignment(alignment,
- columnSelection != null ? columnSelection.getHiddenColumns()
+ hidden != null ? hidden.getHiddenRegions()
: null, selectionGroup);
}