RNA rna;
-
/**
* This annotation is displayed below the alignment but the positions are tied
* to the residues of this sequence
{
if (lastj != -1)
{
- map.add(new int[]
- { lastj, j - 1 });
+ map.add(new int[] { lastj, j - 1 });
lastj = -1;
}
}
}
if (lastj != -1)
{
- map.add(new int[]
- { lastj, j - 1 });
+ map.add(new int[] { lastj, j - 1 });
lastj = -1;
}
return map;
.toArray(new AlignmentAnnotation[annotation.size()]);
}
-
@Override
public boolean hasAnnotation(AlignmentAnnotation ann)
{
for (int si = 0; si < sfs.length; si++)
{
SequenceFeature sf[] = (mp != null) ? mp.locateFeature(sfs[si])
- : new SequenceFeature[]
- { new SequenceFeature(sfs[si]) };
+ : new SequenceFeature[] { new SequenceFeature(sfs[si]) };
if (sf != null && sf.length > 0)
{
for (int sfi = 0; sfi < sf.length; sfi++)