*/
package jalview.datamodel;
+import jalview.analysis.AAFrequency;
+import jalview.analysis.Conservation;
+import jalview.schemes.ColourSchemeI;
+import jalview.schemes.ResidueProperties;
+
import java.awt.Color;
import java.util.ArrayList;
import java.util.Hashtable;
import java.util.Map;
import java.util.Vector;
-import jalview.analysis.AAFrequency;
-import jalview.analysis.Conservation;
-import jalview.schemes.ColourSchemeI;
-import jalview.schemes.ResidueProperties;
-
/**
* Collects a set contiguous ranges on a set of sequences
*
{
synchronized (sequences)
{
- if (sequences.contains(s))
- {
- deleteSequence(s, recalc);
- }
- else
- {
- addSequence(s, recalc);
+ if (sequences.contains(s))
+ {
+ deleteSequence(s, recalc);
+ }
+ else
+ {
+ addSequence(s, recalc);
}
}
}
synchronized (sequences)
{
// MC This needs to get reset when characters are inserted and deleted
- boolean first=true;
- for (SequenceI seq:sequences) {
+ boolean first = true;
+ for (SequenceI seq : sequences)
+ {
if (first || seq.getLength() > width)
{
width = seq.getLength();