/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
public ColourSchemeI cs;
+ // start column (base 0)
int startRes = 0;
+ // end column (base 0)
int endRes = 0;
public Color outlineColour = Color.black;
{
synchronized (sequences)
{
- if (sequences.contains(s))
- {
- deleteSequence(s, recalc);
- }
- else
- {
- addSequence(s, recalc);
+ if (sequences.contains(s))
+ {
+ deleteSequence(s, recalc);
+ }
+ else
+ {
+ addSequence(s, recalc);
}
}
}
synchronized (sequences)
{
// MC This needs to get reset when characters are inserted and deleted
- boolean first=true;
- for (SequenceI seq:sequences) {
+ boolean first = true;
+ for (SequenceI seq : sequences)
+ {
if (first || seq.getLength() > width)
{
width = seq.getLength();
return false;
}
+ /**
+ * Remove all sequences from the group (leaving other properties unchanged).
+ */
public void clear()
{
synchronized (sequences)