* @param type
* @return
*/
- List<SequenceFeature> findFeatures(int from, int to,
- String... type);
+ List<SequenceFeature> findFeatures(int from, int to, String... type);
/**
* Answers a list of all features stored, in no particular guaranteed order.
* @param type
* @return
*/
- List<SequenceFeature> getPositionalFeatures(
- String... type);
+ List<SequenceFeature> getPositionalFeatures(String... type);
/**
* Answers a list of all contact features, optionally restricted to specified
* if no type is specified, all are returned
* @return
*/
- List<SequenceFeature> getNonPositionalFeatures(
- String... type);
+ List<SequenceFeature> getNonPositionalFeatures(String... type);
/**
* Deletes the given feature from the store, returning true if it was found
* @param type
* @return
*/
- Set<String> getFeatureGroups(boolean positionalFeatures,
- String... type);
+ Set<String> getFeatureGroups(boolean positionalFeatures, String... type);
/**
* Answers the set of distinct feature types for which there is at least one
* @param groups
* @return
*/
- Set<String> getFeatureTypesForGroups(
- boolean positionalFeatures, String... groups);
+ Set<String> getFeatureTypesForGroups(boolean positionalFeatures,
+ String... groups);
/**
* Answers a set of the distinct feature types for which a feature is stored.