}
}
showConsensusHistogram = Cache.getDefault("SHOW_CONSENSUS_HISTOGRAM", true);
- showConsensusProfile = Cache.getDefault("SHOW_CONSENSUS_PROFILE", false);
+ showSequenceLogo = Cache.getDefault("SHOW_CONSENSUS_LOGO", false);
showGroupConsensus = Cache.getDefault("SHOW_GROUP_CONSENSUS", false);
// TODO: add menu option action that nulls or creates consensus object depending on if the user wants to see the annotation or not in a specific alignment
consensus = new AlignmentAnnotation("Consensus", "PID",
/**
* should consensus profile be rendered by default
*/
- public boolean showConsensusProfile = false;
+ public boolean showSequenceLogo = false;
/**
* should consensus histograms be rendered by default
*/
/**
* @return the showConsensusProfile
*/
- public boolean isShowConsensusProfile()
+ public boolean isShowSequenceLogo()
{
- return showConsensusProfile;
+ return showSequenceLogo;
}
/**
- * @param showConsensusProfile the showConsensusProfile to set
+ * @param showSequenceLogo the new value
*/
- public void setShowConsensusProfile(boolean showConsensusProfile)
+ public void setShowSequenceLogo(boolean showSequenceLogo)
{
- this.showConsensusProfile = showConsensusProfile;
+ this.showSequenceLogo = showSequenceLogo;
}
/**
* @param showConsensusHistogram the showConsensusHistogram to set