*/
package jalview.gui;
-import jalview.api.FeatureColourI;
+import jalview.api.FeatureRenderer;
import jalview.bin.Cache;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.SequenceI;
-import jalview.datamodel.features.FeatureMatcherSetI;
import jalview.io.AnnotationFile;
import jalview.io.FeaturesFile;
import jalview.io.JalviewFileChooser;
import java.awt.event.ActionListener;
import java.io.FileWriter;
import java.io.PrintWriter;
-import java.util.List;
-import java.util.Map;
import javax.swing.BorderFactory;
import javax.swing.ButtonGroup;
{
String text;
SequenceI[] sequences = ap.av.getAlignment().getSequencesArray();
- Map<String, FeatureColourI> featureColours = ap.getFeatureRenderer()
- .getDisplayedFeatureCols();
- Map<String, FeatureMatcherSetI> featureFilters = ap.getFeatureRenderer()
- .getFeatureFilters();
- List<String> featureGroups = ap.getFeatureRenderer()
- .getDisplayedFeatureGroups();
boolean includeNonPositional = ap.av.isShowNPFeats();
FeaturesFile formatter = new FeaturesFile();
+ final FeatureRenderer fr = ap.getFeatureRenderer();
if (GFFFormat.isSelected())
{
- text = formatter.printGffFormat(sequences, featureColours,
- featureGroups, includeNonPositional);
+ text = formatter.printGffFormat(sequences, fr, includeNonPositional);
}
else
{
- text = formatter.printJalviewFormat(sequences, featureColours,
- featureFilters, featureGroups, includeNonPositional);
+ text = formatter.printJalviewFormat(sequences, fr,
+ includeNonPositional);
}
return text;
}