/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.gui;
-import jalview.util.MessageManager;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Component;
import fr.orsay.lri.varna.models.rna.Mapping;
import fr.orsay.lri.varna.models.rna.RNA;
+import jalview.datamodel.SequenceI;
+import jalview.structure.AtomSpec;
+import jalview.util.MessageManager;
+
public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding
implements DropTargetListener, InterfaceVARNAListener,
MouseListener
public void onWarningEmitted(String s)
{
- // TODO Auto-generated method stub
-
}
public void mouseClicked(MouseEvent e)
public void mouseEntered(MouseEvent arg0)
{
- // TODO Auto-generated method stub
-
}
public void mouseExited(MouseEvent arg0)
{
- // TODO Auto-generated method stub
-
}
public void mousePressed(MouseEvent arg0)
{
- // TODO Auto-generated method stub
-
}
public void mouseReleased(MouseEvent arg0)
{
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public Color getColour(int atomIndex, int pdbResNum, String chain,
- String pdbId)
- {
- // TODO Auto-generated method stub
- return null;
}
@Override
public String[] getPdbFile()
{
- // TODO Auto-generated method stub
return null;
}
@Override
- public void highlightAtom(int atomIndex, int pdbResNum, String chain,
- String pdbId)
- {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void mouseOverStructure(int atomIndex, String strInfo)
- {
- // TODO Auto-generated method stub
-
- }
-
- @Override
public void releaseReferences(Object svl)
{
- // TODO Auto-generated method stub
-
}
@Override
public void updateColours(Object source)
{
- // TODO Auto-generated method stub
-
}
@Override
public void componentHidden(ComponentEvent e)
{
- // TODO Auto-generated method stub
-
}
@Override
public void componentMoved(ComponentEvent e)
{
- // TODO Auto-generated method stub
-
}
@Override
public void componentResized(ComponentEvent e)
{
- // TODO Auto-generated method stub
-
}
@Override
public void componentShown(ComponentEvent e)
{
- // TODO Auto-generated method stub
-
}
@Override
public void onStructureRedrawn()
{
- // TODO Auto-generated method stub
-
}
@Override
public void onZoomLevelChanged()
{
- // TODO Auto-generated method stub
-
}
@Override
public void onTranslationChanged()
{
- // TODO Auto-generated method stub
+ }
+ @Override
+ public void highlightAtoms(List<AtomSpec> atoms)
+ {
}
-}
-/*
- * public static void main(String[] args) { JTextField str = new
- * JTextField("ATGC");
- *
- * AppVarnaBinding vab = new AppVarnaBinding(); vab.varnagui.set_seq(str);
- * vab.varnagui.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
- * vab.varnagui.pack(); vab.varnagui.setVisible(true); } }
- */
+ @Override
+ public boolean isListeningFor(SequenceI seq)
+ {
+ return true;
+ }
+}