TreeBuilder calculatedTree = treeCalculator
.makeTree(af.getViewport());
TreeModel tree = new TreeModel(calculatedTree);
- openTreePanel(tree, treeAlgo, params);
+ openTreePanel(tree, treeAlgo, substitutionMatrix);
- ArchaeopteryxTreeBuilder aptxTree = new ArchaeopteryxTreeBuilder();
+ ArchaeopteryxTreeBuilder aptxTree = new ArchaeopteryxTreeBuilder(
+ tree);
}
* @param treeAlgo
*/
protected void openTreePanel(TreeModel tree, String treeAlgo,
- SimilarityParamsI params)
+ String substitutionMatrix)
{
/*
* gui validation shouldn't allow insufficient sequences here, but leave
*/
checkEnoughSequences(af.getViewport());
- af.newTreePanel(tree, treeAlgo, params);
+ af.newTreePanel(tree, treeAlgo, substitutionMatrix);
}
/**