import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceNode;
-import jalview.ext.archaeopteryx.ArchaeopteryxNewickInit;
import jalview.io.JalviewFileChooser;
import jalview.io.JalviewFileView;
import jalview.io.NewickFile;
*
* @param ap
* @param tree
+ * @param treeType
+ * @param substitutionMatrix
*/
public TreePanel(AlignmentPanel ap, TreeModel tree, String treeType,
String substitutionMatrix)
* @param newtree
* @param theTitle
* @param inputData
- * @param viewport
*/
public TreePanel(AlignmentPanel alignPanel, NewickFile newtree,
String theTitle, AlignmentView inputData)
sortByTree_actionPerformed();
}
- ArchaeopteryxNewickInit archae = new ArchaeopteryxNewickInit(tree);
- archae.startArchaeopteryx();
}
}