Vector selectedButtons;\r
ColourSchemeI oldColourScheme;\r
JInternalFrame frame;\r
- MCview.PDBCanvas pdbcanvas;\r
+ AppJMol jmol;\r
Vector upperCaseButtons;\r
Vector lowerCaseButtons;\r
\r
showFrame();\r
}\r
\r
- public UserDefinedColours(MCview.PDBCanvas pdb, ColourSchemeI oldcs)\r
+ public UserDefinedColours(AppJMol jmol, ColourSchemeI oldcs)\r
{\r
super();\r
- pdbcanvas = pdb;\r
+ this.jmol = jmol;\r
\r
colorChooser.getSelectionModel().addChangeListener(this);\r
\r
{\r
ap.alignFrame.changeColour(ucs);\r
}\r
- else if (pdbcanvas != null)\r
+ else if (jmol != null)\r
{\r
- pdbcanvas.pdb.setColours(ucs);\r
- pdbcanvas.updateSeqColours();\r
+ jmol.setJalviewColourScheme(ucs);\r
}\r
}\r
\r
ap.paintAlignment(true);\r
}\r
\r
- if (pdbcanvas != null)\r
+ if (jmol != null)\r
{\r
- pdbcanvas.pdb.setColours(oldColourScheme);\r
+ jmol.setJalviewColourScheme(oldColourScheme);\r
}\r
\r
try\r