formats.addElement("PFAM");\r
}\r
\r
+ AlignFile afile = null;\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public static SequenceI[] readFile(String inFile, String type, String format)\r
+ public SequenceI[] readFile(String inFile, String type, String format)\r
{\r
try\r
{\r
- AlignFile afile = null;\r
-\r
if (format.equals("FASTA"))\r
{\r
afile = new FastaFile(inFile, type);\r
return null;\r
}\r
\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public static String formatSequences(String format, Vector seqs)\r
+ public String formatSequences(String format, Vector seqs)\r
{\r
SequenceI[] s = new SequenceI[seqs.size()];\r
\r