*/
package jalview.io;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.net.URL;
+import java.util.Objects;
+
import jalview.api.AlignExportSettingsI;
import jalview.bin.Cache;
+import jalview.bin.Jalview;
import jalview.datamodel.AlignExportSettingsAdapter;
import jalview.datamodel.AlignmentExportData;
import jalview.gui.AlignmentPanel;
import jalview.gui.IProgressIndicator;
+import jalview.io.exceptions.ImageOutputException;
+import jalview.util.IdUtils;
+import jalview.util.IdUtils.IdType;
import jalview.util.MessageManager;
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStreamReader;
-import java.net.URL;
-import java.util.Objects;
-
public abstract class HTMLOutput implements Runnable
{
protected AlignmentPanel ap;
+ /*
+ * key for progress or status messages
+ */
protected long pSessionId;
+ /*
+ * (optional) place to write progress messages to
+ */
protected IProgressIndicator pIndicator;
protected File generatedFile;
String _bioJson = null;
+ private String description;
+
/**
* Constructor given an alignment panel (which should not be null)
*
* @param ap
+ * @param desc
*/
- public HTMLOutput(AlignmentPanel ap)
+ public HTMLOutput(AlignmentPanel ap, String desc)
{
this.ap = ap;
this.pIndicator = ap.alignFrame;
+ this.description = desc;
+ this.pSessionId = IdUtils.newId(IdType.PROGRESS);
}
/**
}
else
{
- System.out.println(message);
+ jalview.bin.Console.outPrintln(message);
}
}
/**
* This method provides implementation of consistent behaviour which should
- * occur before a HTML file export. It MUST be called at the start of the
- * exportHTML() method implementation.
- */
- protected void exportStarted()
- {
- pSessionId = System.currentTimeMillis();
- }
-
- /**
- * This method provides implementation of consistent behaviour which should
* occur after a HTML file export. It MUST be called at the end of the
* exportHTML() method implementation.
*/
{
if (isLaunchInBrowserAfterExport() && !isHeadless())
{
+ /*
try
{
- jalview.util.BrowserLauncher
- .openURL("file:///" + getExportedFile());
+ */
+ jalview.util.BrowserLauncher.openURL("file:///" + getExportedFile());
+ /*
} catch (IOException e)
{
e.printStackTrace();
}
+ */
}
}
return generatedFile;
}
- public void exportHTML(String outputFile)
+ public void exportHTML(String outputFile) throws ImageOutputException
+ {
+ exportHTML(outputFile, null);
+ }
+
+ public void exportHTML(String outputFile, String renderer)
+ throws ImageOutputException
{
- exportStarted();
+ setProgressMessage(MessageManager.formatMessage(
+ "status.exporting_alignment_as_x_file", getDescription()));
try
{
if (outputFile == null)
e.printStackTrace();
return;
}
- new Thread(this).start();
-
+ if (Jalview.isHeadlessMode())
+ {
+ this.run(renderer);
+ }
+ else
+ {
+ new Thread(this).start();
+ }
+
}
/**
*
* @return
*/
- protected abstract String getDescription();
+ protected final String getDescription()
+ {
+ return description;
+ }
+
+ // used to pass an option such as render to run
+ public abstract void run(String string) throws ImageOutputException;
}
\ No newline at end of file