import jalview.datamodel.ColumnSelection;
import jalview.datamodel.SequenceI;
-import java.io.BufferedReader;
-import java.io.File;
import java.io.IOException;
-import java.io.InputStreamReader;
import java.io.StringReader;
-import java.net.URL;
-import java.util.Objects;
import org.jsoup.Jsoup;
import org.jsoup.nodes.Document;
return new PDBFeatureSettings();
}
- /**
- * Read a template file content as string
- *
- * @param file
- * - the file to be read
- * @return File content as String
- * @throws IOException
- */
- public static String readFileAsString(File file) throws IOException
- {
- InputStreamReader isReader = null;
- BufferedReader buffReader = null;
- StringBuilder sb = new StringBuilder();
- Objects.requireNonNull(file, "File must not be null!");
- @SuppressWarnings("deprecation")
- URL url = file.toURL();
- if (url != null)
- {
- try
- {
- isReader = new InputStreamReader(url.openStream());
- buffReader = new BufferedReader(isReader);
- String line;
- String lineSeparator = System.getProperty("line.separator");
- while ((line = buffReader.readLine()) != null)
- {
- sb.append(line).append(lineSeparator);
- }
-
- } catch (Exception ex)
- {
- ex.printStackTrace();
- } finally
- {
- if (isReader != null)
- {
- isReader.close();
- }
-
- if (buffReader != null)
- {
- buffReader.close();
- }
- }
- }
- return sb.toString();
- }
-
}