*/
package jalview.schemes;
-import jalview.analysis.Conservation;
+import jalview.api.AlignViewportI;
import jalview.datamodel.AnnotatedCollectionI;
-import jalview.datamodel.ProfilesI;
-import jalview.datamodel.SequenceCollectionI;
-import jalview.datamodel.SequenceI;
-
-import java.util.Map;
/**
* Colourscheme that takes its colours from some other colourscheme
public class FollowerColourScheme extends ResidueColourScheme
{
- protected ColourSchemeI colourScheme;
+ private ColourSchemeI colourScheme;
public ColourSchemeI getBaseColour()
{
}
@Override
- public void setConsensus(ProfilesI consensus)
- {
- if (colourScheme != null)
- {
- colourScheme.setConsensus(consensus);
- }
- }
-
- @Override
- public void setConservation(Conservation cons)
- {
- if (colourScheme != null)
- {
- colourScheme.setConservation(cons);
- }
- }
-
- @Override
- public void setConservationInc(int i)
- {
- if (colourScheme != null)
- {
- colourScheme.setConservationInc(i);
- }
- }
-
- @Override
public String getSchemeName()
{
return "Follower";
* be coloured
*/
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI coll,
- Map<SequenceI, SequenceCollectionI> hrs)
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI coll)
{
return new FollowerColourScheme();
}
+ protected ColourSchemeI getColourScheme()
+ {
+ return colourScheme;
+ }
+
+ protected void setColourScheme(ColourSchemeI colourScheme)
+ {
+ this.colourScheme = colourScheme;
+ }
+
}