*\r
* @return DOCUMENT ME!\r
*/\r
- public Color findColour(String n)\r
+ public Color findColour(char c)\r
{\r
// System.out.println("called"); log.debug\r
- return colors[ResidueProperties.nucleotideIndex[n.charAt(0)]];\r
+ return colors[ResidueProperties.nucleotideIndex[c]];\r
}\r
\r
/**\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public Color findColour(String n, int j)\r
+ public Color findColour(char c, int j)\r
{\r
Color currentColour;\r
- if ((threshold == 0) || aboveThreshold(n, j))\r
+ if ((threshold == 0) || aboveThreshold(c, j))\r
{\r
try\r
{\r
- currentColour = colors[ ResidueProperties.nucleotideIndex[n.charAt(0)]];\r
+ currentColour = colors[ ResidueProperties.nucleotideIndex[c]];\r
}\r
catch (Exception ex)\r
{\r
}\r
\r
if(conservationColouring)\r
- applyConservation(currentColour, j);\r
+ currentColour = applyConservation(currentColour, j);\r
\r
return currentColour;\r
}\r