s = String.valueOf(c);\r
}\r
\r
+ if (consensus == null || consensus[j] == null)\r
+ return false;\r
\r
- if ((((Integer) consensus[j].get(AAFrequency.MAXCOUNT)).intValue() != -1) &&\r
- consensus[j].contains(s))\r
+ if ( ( ( (Integer) consensus[j].get(AAFrequency.MAXCOUNT)).intValue() != -1) &&\r
+ consensus[j].contains(s))\r
{\r
- if (((Float)consensus[j].get(ignoreGaps)).floatValue() >= threshold)\r
- {\r
- return true;\r
- }\r
+ if ( ( (Float) consensus[j].get(ignoreGaps)).floatValue() >= threshold)\r
+ {\r
+ return true;\r
+ }\r
}\r
\r
return false;\r