{
long nseq = getSequences().length;
- AAFrequency.completeConsensus(consensusAnnotation, hconsensus, 0,
+ AAFrequency.completeConsensus(consensusAnnotation, hconsensus,
+ hconsensus.getStartColumn(),
hconsensus.getEndColumn() + 1,
alignViewport.isIgnoreGapsConsensus(),
alignViewport.isShowSequenceLogo(), nseq);