*/
package jalview.ws.jws1;
+import java.util.Locale;
+
import jalview.analysis.AlignSeq;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SeqCigar;
import jalview.datamodel.SequenceI;
Jpred server = locateWebService();
if (server == null)
{
- Cache.log.warn("Couldn't find a Jpred webservice to invoke!");
+ Console.warn("Couldn't find a Jpred webservice to invoke!");
return;
}
SeqCigar[] msf = null;
private String getPredictionName(String webServiceName)
{
- if (webServiceName.toLowerCase()
+ if (webServiceName.toLowerCase(Locale.ROOT)
.indexOf("secondary structure prediction") > -1)
{
return webServiceName;