import jalview.datamodel.AlignmentView;
import jalview.gui.AlignFrame;
import jalview.gui.Desktop;
+import jalview.gui.JvOptionPane;
import jalview.gui.WebserviceInfo;
import jalview.util.MessageManager;
import javax.swing.JMenu;
import javax.swing.JMenuItem;
-import javax.swing.JOptionPane;
import ext.vamsas.SeqSearchServiceLocator;
import ext.vamsas.SeqSearchServiceSoapBindingStub;
// name to service client name
if (!sh.getAbstractName().equals(this.getServiceActionKey()))
{
- JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
- .formatMessage(
+ JvOptionPane.showMessageDialog(Desktop.desktop,
+ MessageManager.formatMessage(
"label.service_called_is_not_seq_search_service",
- new String[] { sh.getName() }), MessageManager
- .getString("label.internal_jalview_error"),
- JOptionPane.WARNING_MESSAGE);
+ new String[]
+ { sh.getName() }),
+ MessageManager.getString("label.internal_jalview_error"),
+ JvOptionPane.WARNING_MESSAGE);
return;
}
if ((wsInfo = setWebService(sh)) == null)
{
- JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
- .formatMessage("label.seq_search_service_is_unknown",
- new String[] { sh.getName() }), MessageManager
- .getString("label.internal_jalview_error"),
- JOptionPane.WARNING_MESSAGE);
+ JvOptionPane.showMessageDialog(Desktop.desktop,
+ MessageManager.formatMessage(
+ "label.seq_search_service_is_unknown", new String[]
+ { sh.getName() }),
+ MessageManager.getString("label.internal_jalview_error"),
+ JvOptionPane.WARNING_MESSAGE);
return;
}
// sequence db
boolean profileSearch = msa.getSequences().length > 2 ? true : false;
// single sequence or profile from alignment view
- wsInfo.setProgressText("Searching "
- + visdb
- + (!profileSearch ? " with sequence "
- + msa.getSequences()[0].getRefSeq().getName()
- : " with profile") + " from " + altitle
- + "\nJob details\n");
+ wsInfo.setProgressText("Searching " + visdb
+ + (!profileSearch
+ ? " with sequence "
+ + msa.getSequences()[0].getRefSeq().getName()
+ : " with profile")
+ + " from " + altitle + "\nJob details\n");
String jobtitle = WebServiceName
+ ((WebServiceName.indexOf("earch") > -1) ? " " : " search ")
- + " of "
- + visdb
- + (!profileSearch ? " with sequence "
- + msa.getSequences()[0].getRefSeq().getName()
- : " with profile") + " from " + altitle;
+ + " of " + visdb
+ + (!profileSearch
+ ? " with sequence "
+ + msa.getSequences()[0].getRefSeq().getName()
+ : " with profile")
+ + " from " + altitle;
SeqSearchWSThread ssthread = new SeqSearchWSThread(server, WsURL,
wsInfo, alignFrame, WebServiceName, jobtitle, msa, db,
seqdataset);
if (!locateWebService())
{
throw new Exception(MessageManager.formatMessage(
- "exception.cannot_contact_service_endpoint_at",
- new String[] { WsURL }));
+ "exception.cannot_contact_service_endpoint_at", new String[]
+ { WsURL }));
}
String database = server.getDatabase();
if (database == null)
JMenu defmenu = (JMenu) dbsrchs.get("Default Database");
if (defmenu == null)
{
- dbsrchs.put("Default Database", defmenu = new JMenu(
- "Default Database"));
+ dbsrchs.put("Default Database",
+ defmenu = new JMenu("Default Database"));
newdbsrch.addElement(defmenu);
}
{
jalview.bin.Cache.log.warn(
"Database list request failed, so disabling SeqSearch Service client "
- + sh.getName() + " at " + sh.getEndpointURL(), e);
+ + sh.getName() + " at " + sh.getEndpointURL(),
+ e);
return;
}
JMenuItem method;