*/
package jalview.ws.rest;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Hashtable;
-import java.util.Map;
-import java.util.Set;
-import java.util.Vector;
-
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentOrder;
import jalview.ws.rest.params.Alignment;
import jalview.ws.rest.params.SeqGroupIndexVector;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Hashtable;
+import java.util.Map;
+import java.util.Set;
+import java.util.Vector;
+
public class RestJob extends AWsJob
{
* @param viscontigs
* visible contigs of an alignment view from which _input was derived
*/
- public RestJob(int jobNum, RestJobThread restJobThread,
- AlignmentI _input, int[] viscontigs)
+ public RestJob(int jobNum, RestJobThread restJobThread, AlignmentI _input,
+ int[] viscontigs)
{
rsd = restJobThread.restClient.service;
jobnum = jobNum;
// get sequences for the alignmentI
// get groups trimmed to alignment columns
// get any annotation trimmed to start/end columns, too.
- squniq = jalview.analysis.SeqsetUtils.uniquify(
- _input.getSequencesArray(), true);
+ squniq = jalview.analysis.SeqsetUtils
+ .uniquify(_input.getSequencesArray(), true);
// prepare input
// form alignment+groups+annotation,preprocess and then record references
// for formatters
}
else
{
- statMessage = ("Not enough groups defined on the alignment - need at least " + prm
- .getValue().min);
+ statMessage = ("Not enough groups defined on the alignment - need at least "
+ + prm.getValue().min);
}
}
}