import jalview.datamodel.SearchResultsI;
import jalview.datamodel.Sequence;
import jalview.gui.AlignFrame;
+import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
import java.util.List;
public class FinderTest
{
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
private AlignFrame af;
private AlignmentI al;
String seqData = "seq1 ABCD--EF-GHI\n" + "seq2 A--BCDefHI\n"
+ "seq3 --bcdEFH\n" + "seq4 aa---aMMMMMaaa\n";
af = new FileLoader().LoadFileWaitTillLoaded(seqData,
- FormatAdapter.PASTE);
+ DataSourceType.PASTE);
al = af.getViewport().getAlignment();
}